Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00925 ATGATTCTCTCCACGATGTTCCAACCATTTTGTGTACTTCTTGTAATGTGCTTTTGTGCACTTGCAATGGCCATTTCTCCTAATTATTATGATGCTGGTTCTTCAGAGATTGCTTCCTTTGCTTCTTCAGCAAGATCACATAGCAAAGAAGCAAATGCTTTGTTGAAGTGGAAAGCCACCCTTGACAACCAAAGCCGAGCTTCTCTCTCTTCATGGACCGGCAATAATACTTGCAATTGGCTTGGAATTGCATGTGATGAGTCCAATTCTGTTTCCCACATAAGTCTTGCACTTGTTGGATTAAGAGGTACCCTTCAAAGTCTTAACTTCTCATTACTTCCAAACATCCTCACTTTAAATATGAGTCACAACTCCTTGAATGGAAGTATTCCTCCTCAAATTGGAGTGTTGTTCAAACTCAACGCTCTTGATTTGTCAGCTAATAATCTCTTTGGTAGCATTCCAAATAGCATTGGTAATCTATCCAAACTCTTTTATCTTTTTCTTCATGACAATGGTTTATCTGGGACAATTCCTTCTGAAATAACAAAATTGGTTGGTCTTCATTCATTGGTCATGGGTCATAATTTTTTCAGTGGATCTCTTCCTCAAGAAATAGGTAGCTTGAGGAATATGTCGATGCTTGATTTCCAGTGGTCTAATCTCACAGGGCCTATTCCAATATCAATAGAAAAGTTAAACAATTTGTCTTATCTAGATTTAGGAGGTAACAACCTTTCTGGCAACATTCCACAGGGAATATGGCATATGGACCTAAAATATTTGTCACTTGCAATTAATAACTTCAATGGTTCCCTACCCAATCTCACAGGGATTGTCCCAAACTCCATAGAAAAGTTAAACAATTTGTCTACTCTAGATTTAGGAGCCAACAACTTTTTTGGCAACATTCCAGAGGGAATTTGGCACATGAACCAACTAAAGTATTTGTCTCTTGCAGATAATAACTTCAACGGTTCCCTCCCTCGAGAAATTGGGAACTTAAGGAATCTAGAGTATCTAAATCTTATAAAAAGTGGCCTTTCTGGCTCCATACCTAAACAAATTGGGATGTTAGGGAACTTAACACAACTTTACATGAGCCAATGTAATTTCAGTGGGCCTATTCCTCGTGAAATTGGGAAGTTGGTTAACCTCAGGATCCTAAATCTTGCAGAAAATAATCTTTTTGGCTCTATTCCTCATGAAATCGAATCTTTGAAAACACTTAGTGAACTTGATTTGTCTCGTAATTTTCTCTCAGGGACAATCCCTTCTACAATTGGAAACTTGACCAATTTATATTATCTTTACCTTTATTCAAACAGTTTATCAGGCTCTATTCCTGATGAAGTGGGAAATCTCCATTCATTGGACCAGGTCCAATTGTTGGGAAACAACCTTTCTGGATCAATTCCTTCAACTATTGGAAATTTAACAAATCTCGGTGTATTATTATTAAGTGATAATAAACTTGGTGGAAAGATTCCAACAGAAATGAACAGACTTACTAATCTGATAAAATTGCAGATAAATGACAATAATTTTATTGGACATTTACCTCAAAACATTTGCATTGGTGGAAAGCTGACAAATATTTCTGCTAGCAATAACTATTTCTATGGCCCGATTCCAGAGAGTTTGAAGAATTGCTTTAGCCTTATACGAGTCAGGCTTCAGCAAAACCAACTAAATGGGGATATAACAAACGCTTTTGGTGTACTTCCAAACTTGAACTACATCGAATTAAGTGAAAATAATCTTTATGGTCACCTCTCACCTAACTGGGGAAAATTCCATAAACTCGGAAGCCTCAAGATCTCCAACAATAATTTATCAGGTGTTATACCACCAGAATTAGGCGGGGCAACCAACTTACATGTACTTGACCTATCCTCAAACCATCTTACAGGAAACATCCCACGAGATTTATGTAAGTTGACCTTCTTGATTAATCTCTCAATCAACAACAATAGTCTCACAGGAAATGTTCCCATAGAAATCATAGCATTACAAAATCTTCAAAGTTTGATGCTTGGGTCAAATGATTTTTCTGGCTTATTCCCAAAACAACTTGGAAATTTGCAAAATTTATTGAACATGGGTCTAGGCCAAAATAAATTTGAGGGAAATATTCCTTTAGAGCTTGGCAAATTGAAATTTCTTACAAGTCTCGATCTTAGTGAAAATTTATTGAATGGAACAATACCATCAATGCTTGGAGAAATGCAAAGCTTACAAACATTAAATCTATCTCACAATAATCTTTCAGGTGATCTATCTAGTTTTATTGGTATGATAAGCTTGACATCTATTGATATCTCATATAATCAATTTGAGGGTCCACTTCCAAACAGACCAGCCTTCCTTAATGCTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATATCACTGGATTAGAGCCTTGTGCAACATTAAGTTGGAAATCTCATAATCATATGGAAAAAAAAGTCATAAGATTAGTTTTACCCCTTACTTTGGGCACTTTAATGTTTGCCTTATTTGCTTTTGGAGTCTTGTATCGTTTATGCAAAACATCAAAGAAAAAAGAAGGCCCAAGCACAAATTCACAAAATCCAAACATATTTGCAATATGGAGCTTTGATGGAAAAATGATATTTGAGAATATTATTGAGGCCACAGAAAATTTTGATAACAAATATCTCATTGGGGTTGGAGGTCAAGGATCTGTTTACAAAGCAATGTTACCTACAAGTCAAGTTGTTGCTGTAAAGAAACTCCACTCATTTCCAAATGGAGAAATATTCGATATGAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTTGCATAAACAATTCTCATTTTTAGTGTGTGAGTTCCTAGAGAAGGGAGATGTTGAAAAGAATTTGAAGGATGATGAACAAGCAATTGCATTTGACTGGAATAAAAGGGTGAATGTCGTTAAAGGTGTATCAAATGCTTTATGTTATATGCACCATGATTGCTCACCTTCAATTGTTCATCGTGATATATCAAGCAAGAATGTCCTTTTGAATTCAGAATATATTGCTCATGTCTCAGACTTTGGAACAGCTAAGCTTCTTAATCCAAATTCATCAAATTGGACCTCATTTGCTGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTAAATGAGAAATGTGATGTGTATAGTTTTGGAATCTTGGCATTAGAAATACTTTTTGGAAAACACCCTGGTGATGCCATATCTTCTTTATCGGTATCATCTTCAATGACTAGTGCGGCCATAACACTTGATCATACTCTACTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACTAGCCTTGTTGTTAAGGAAGTGATATCAATTTTAAAGATAGCAATCGCTTGCTTGAATGAAAGCCCACGATCTCGCCCTACCATGGAGCAAGTTGCCAAAGAGCTTGTCAAGTCAACCTCGTCTTAA 3525 0.3634 MILSTMFQPFCVLLVMCFCALAMAISPNYYDAGSSEIASFASSARSHSKEANALLKWKATLDNQSRASLSSWTGNNTCNWLGIACDESNSVSHISLALVGLRGTLQSLNFSLLPNILTLNMSHNSLNGSIPPQIGVLFKLNALDLSANNLFGSIPNSIGNLSKLFYLFLHDNGLSGTIPSEITKLVGLHSLVMGHNFFSGSLPQEIGSLRNMSMLDFQWSNLTGPIPISIEKLNNLSYLDLGGNNLSGNIPQGIWHMDLKYLSLAINNFNGSLPNLTGIVPNSIEKLNNLSTLDLGANNFFGNIPEGIWHMNQLKYLSLADNNFNGSLPREIGNLRNLEYLNLIKSGLSGSIPKQIGMLGNLTQLYMSQCNFSGPIPREIGKLVNLRILNLAENNLFGSIPHEIESLKTLSELDLSRNFLSGTIPSTIGNLTNLYYLYLYSNSLSGSIPDEVGNLHSLDQVQLLGNNLSGSIPSTIGNLTNLGVLLLSDNKLGGKIPTEMNRLTNLIKLQINDNNFIGHLPQNICIGGKLTNISASNNYFYGPIPESLKNCFSLIRVRLQQNQLNGDITNAFGVLPNLNYIELSENNLYGHLSPNWGKFHKLGSLKISNNNLSGVIPPELGGATNLHVLDLSSNHLTGNIPRDLCKLTFLINLSINNNSLTGNVPIEIIALQNLQSLMLGSNDFSGLFPKQLGNLQNLLNMGLGQNKFEGNIPLELGKLKFLTSLDLSENLLNGTIPSMLGEMQSLQTLNLSHNNLSGDLSSFIGMISLTSIDISYNQFEGPLPNRPAFLNATIEALRNNKGLCGNITGLEPCATLSWKSHNHMEKKVIRLVLPLTLGTLMFALFAFGVLYRLCKTSKKKEGPSTNSQNPNIFAIWSFDGKMIFENIIEATENFDNKYLIGVGGQGSVYKAMLPTSQVVAVKKLHSFPNGEIFDMKAFTSEIQALTEIRHRNIVKLYGFCLHKQFSFLVCEFLEKGDVEKNLKDDEQAIAFDWNKRVNVVKGVSNALCYMHHDCSPSIVHRDISSKNVLLNSEYIAHVSDFGTAKLLNPNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILALEILFGKHPGDAISSLSVSSSMTSAAITLDHTLLMDKLDQRLPHPTSLVVKEVISILKIAIACLNESPRSRPTMEQVAKELVKSTSS 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00925 1174 SUPERFAMILY RNI-like 275 589 - -
Cca07g00925 1174 SUPERFAMILY L domain-like 77 343 - -
Cca07g00925 1174 Gene3D Ribonuclease Inhibitor 525 815 IPR032675 -
Cca07g00925 1174 Gene3D Ribonuclease Inhibitor 385 524 IPR032675 -
Cca07g00925 1174 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 147 275 - -
Cca07g00925 1174 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 364 1173 - -
Cca07g00925 1174 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 186 - -
Cca07g00925 1174 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 275 368 - -
Cca07g00925 1174 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 186 - -
Cca07g00925 1174 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 275 368 - -
Cca07g00925 1174 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 147 275 - -
Cca07g00925 1174 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 364 1173 - -
Cca07g00925 1174 Gene3D Transferase(Phosphotransferase) domain 1 973 1174 - -
Cca07g00925 1174 ProSiteProfiles Protein kinase domain profile. 894 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00925 1174 SMART LRR_typ_2 479 503 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 287 310 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 624 647 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 233 257 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 311 335 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 719 743 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 113 137 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 575 599 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 671 694 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 383 407 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 431 455 IPR003591 -
Cca07g00925 1174 SMART LRR_typ_2 161 185 IPR003591 -
Cca07g00925 1174 SUPERFAMILY RNI-like 496 783 - -
Cca07g00925 1174 SUPERFAMILY Protein kinase-like (PK-like) 872 1168 IPR011009 -
Cca07g00925 1174 Gene3D Ribonuclease Inhibitor 47 205 IPR032675 -
Cca07g00925 1174 Pfam Leucine rich repeat 722 779 IPR001611 GO:0005515
Cca07g00925 1174 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Cca07g00925 1174 Gene3D Ribonuclease Inhibitor 208 275 IPR032675 -
Cca07g00925 1174 Pfam Protein kinase domain 896 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00925 1174 ProSiteProfiles Leucine-rich repeat profile. 625 648 IPR001611 GO:0005515
Cca07g00925 1174 Gene3D Ribonuclease Inhibitor 276 380 IPR032675 -
Cca07g00925 1174 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1018 1030 IPR008266 GO:0004672|GO:0006468
Cca07g00925 1174 Pfam Leucine Rich Repeat 625 647 IPR001611 GO:0005515
Cca07g00925 1174 ProSiteProfiles Leucine-rich repeat profile. 745 767 IPR001611 GO:0005515
Cca07g00925 1174 Pfam Leucine rich repeat N-terminal domain 48 86 IPR013210 -
Cca07g00925 1174 PRINTS Leucine-rich repeat signature 722 735 - -
Cca07g00925 1174 PRINTS Leucine-rich repeat signature 743 756 - -
Cca07g00925 1174 Gene3D Phosphorylase Kinase; domain 1 855 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00925 Cca-Chr7 16875362 16884895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00925 38 665 Receptor kinase-like Gene Family AT4G08850 33.807 1.02e-87 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca07g00925 Pkinase 7.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00925 - - gmx:100808316 1498.41