Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00917 ATGGTACGACAACCTTGTTGTGATAAGATTGGATTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTAATGAACTTCATTCTCCACAATGGCATCCATTGCTGGAGAACAGTTCCCAAACTAGCAGGTCTTCTAAGATGTGGAAAGAGCTGCAGACTCAGATGGATCAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATTATACAACTACATTCACGGCTTGGTAACAGATGGTCTAAGATCGCTTCACATTTTCCTGGGAGGACAGATAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAAAGACTAAAACTCCTTGGTCTAGACCCTGTGACTCACAAGCCAATTGAGCAAAAGGAACATAATGAGGACACAAATAAAACCAACTCACAACAACCTTATATTTCAGGAGGGTCTGAAGAAAATGTGGAGATGAAATCGTTGGACaaagaaatgatgacaaaaatagaagggaaaagagaagaaaacaaTGTGATGACATGGGATGATACTGCTGAACTTTTAAATAATTTTGAAATGATATTTTCACAGTTGGACTTGGGATCATGGATGAGCCAAGAAATTACCAATACTAGTACTAATTCACTATGTAGTTCTTCTGTCACTTTGGATGACACAAGCCACCTTTCTGTGGATGAATCCTCTTACATACAAGAAAACTCCTTACAGCAATGGGTTGATAGTATGGATTCAATTCTATCATGGGATGGATTTAACCCTCTTGATCAAGACATTTTCTTCTTGGAAAATAGGGAATAA 819 0.3712 MVRQPCCDKIGLKRGPWTIEEDHKLMNFILHNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKPIEQKEHNEDTNKTNSQQPYISGGSEENVEMKSLDKEMMTKIEGKREENNVMTWDDTAELLNNFEMIFSQLDLGSWMSQEITNTSTNSLCSSSVTLDDTSHLSVDESSYIQENSLQQWVDSMDSILSWDGFNPLDQDIFFLENRE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00917 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca07g00917 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca07g00917 272 SMART sant 13 63 IPR001005 -
Cca07g00917 272 SMART sant 66 114 IPR001005 -
Cca07g00917 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Cca07g00917 272 MobiDBLite consensus disorder prediction 128 159 - -
Cca07g00917 272 CDD SANT 16 61 IPR001005 -
Cca07g00917 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 250 - -
Cca07g00917 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca07g00917 272 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca07g00917 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca07g00917 272 CDD SANT 70 110 IPR001005 -
Cca07g00917 272 Gene3D - 68 147 - -
Cca07g00917 272 Gene3D - 11 67 - -
Cca07g00917 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca07g00917 272 PANTHER MYB DOMAIN PROTEIN 40 2 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00917 Cca-Chr7 16638956 16640332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00917 1 195 MYB Transcription Factor Family AT5G16600 57.214 8.53e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g00917 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00917 K09422 - gmx:100783231 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00917 07 16638956 16640332 Cca07g00917 07 16638956 16640332 ECH