Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00911 ATGGCGGTGGGTGAAGAACAGAAACGCAGCCCCAGAAGCGAGAAGGTAGCATTAGCAGATTCGAATGGCCAAAATATTGCGACCCTTTTCAGCCCAAGGTTCAAATCCGCTGCAGCTATGGCTGGTTGGGATGAAGAGGCTCTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGACAGAGATTCCAACCACAAGAGGCGATTTCTTTTGCACTCCAAAACCCCACCTACCAACTCTTCAAGGAAACGTAGAGCTCAGAGGACTCCACAACCTGTAGCTATTCTTGATCTTGATGAAGAAGAAACTCCCAAAAAAGATAGTGGGAGAAAGAAGAAAGGAAAGAAAGTTAACGAGGGAAGCAAAGTAGAAGAGGGTGGGAATGAATTGACCGAGAAGAACAAGGGTGTCTCTTCTTCTAGTTCTGCTCTTCCCTGCATGGATAAACTAAGGGAAGAGCTTTCATGTGCTATTTGTTTGGAGATATGCTATGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTACGATCCGCCGCTGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAGTTAATAAGCAATGGACGATCGTGCACTGTGAACACAGTCCTCTGGAACACAATTCAGCTTCTGTTTCCCCAAGAAATTGAAGCAAGGAAAGCAGCTGGTGCCTTGAATGCTCGACAACAAGCTCAAAATCTGAGTCCAGAAACAGCATTTTATGCCAACATAAGGAATAGAAGCACACCACCATCTAGGGGGGCATCAACCAGAAGTTCAAGGAGGAGTGTGGcaacaacaacaacatcaacaacacaaGAGGATGAGGATGCTGCATTGGCCAGAAGGTTGCAGAGAGAAATTGATGAGCAAAGCCATGGAACAACAACAACTAGAACTCGTGTGTTGCAAAGAGTGGGGGCAAGAAGAGGAGGGATTTCTGCAAGCCGCCAACATGAGGATGCAGCTTTGGCTCTCAGGTTGCAAAGAGAAGAGTTCATGCAAACTTATAGGAGCCAAGAACAGTCTACTACTAGTAGACTACCCTCATCAACATTAGCTAGAGCAAATTTGAGGTCCTTGGCATCTAGAGCCATGAATCTTAGGATTAGTGACAGAAGAAGATAA 1146 0.4494 MAVGEEQKRSPRSEKVALADSNGQNIATLFSPRFKSAAAMAGWDEEALLLASLIVEDTPDRDSNHKRRFLLHSKTPPTNSSRKRRAQRTPQPVAILDLDEEETPKKDSGRKKKGKKVNEGSKVEEGGNELTEKNKGVSSSSSALPCMDKLREELSCAICLEICYEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAGALNARQQAQNLSPETAFYANIRNRSTPPSRGASTRSSRRSVATTTTSTTQEDEDAALARRLQREIDEQSHGTTTTRTRVLQRVGARRGGISASRQHEDAALALRLQREEFMQTYRSQEQSTTSRLPSSTLARANLRSLASRAMNLRISDRRR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00911 381 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 - -
Cca07g00911 381 PANTHER UNCHARACTERIZED 17 251 - -
Cca07g00911 381 PANTHER UNCHARACTERIZED 320 377 - -
Cca07g00911 381 PANTHER - 320 377 - -
Cca07g00911 381 PANTHER - 17 251 - -
Cca07g00911 381 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
Cca07g00911 381 SUPERFAMILY RING/U-box 148 219 - -
Cca07g00911 381 MobiDBLite consensus disorder prediction 1 15 - -
Cca07g00911 381 MobiDBLite consensus disorder prediction 73 87 - -
Cca07g00911 381 MobiDBLite consensus disorder prediction 248 283 - -
Cca07g00911 381 MobiDBLite consensus disorder prediction 1 23 - -
Cca07g00911 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 225 IPR013083 -
Cca07g00911 381 MobiDBLite consensus disorder prediction 57 143 - -
Cca07g00911 381 MobiDBLite consensus disorder prediction 98 131 - -
Cca07g00911 381 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Cca07g00911 381 MobiDBLite consensus disorder prediction 248 281 - -
Cca07g00911 381 SMART ring_2 156 194 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00911 148 198 C2H2 Transcription Factor Family AT5G39550 44.231 2.40e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00911 - - gmx:102666585 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00911 07 16274506 16277213 Cca07g00911 07 16274506 16277213 ECH