Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00890 ATGGCTGGAGGTGTTATTCAGCAGCTATTGAGGAGGAAACTCAACCCTCAATTTACTAACTCTTCCTTGTTGACACCCATCATAGCAAAGAAAGATGATGCTGGCTCCACTGGCAGTAGGTCCTTAAGAGCACTTGCATTAATTGGAGCCGGTATGTCAGGATTTTTCAGTTTTACATCAACAGCAGCAGCTGATGAAGCTGAGCATGGCCTGGCTTGTCCAAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGAGAGATGTTTACACGCCCTGGTAAACTCAGCGATCGTTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCAGACCTAAGTCTTATTACCAAAGCCCGTCACAATGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCTGGTGTTTCGATAAGAGAGGGACTTCATTATAATCCTTACTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAGTATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAAGATGTTGTGTCATTCTTATCTTGGGCCGCGGAACCCGAAATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCTATTACCGTCGGTTGAAGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 924 0.4491 MAGGVIQQLLRRKLNPQFTNSSLLTPIIAKKDDAGSTGSRSLRALALIGAGMSGFFSFTSTAAADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00890 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
Cca07g00890 307 Gene3D - 263 306 - -
Cca07g00890 307 PANTHER CYTOCHROME C1 8 307 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 8 307 - -
Cca07g00890 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Cca07g00890 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Cca07g00890 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00890 Cca-Chr7 15416023 15420886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00890 1 307 Chloroplast and Mitochondria Gene Families AT3G27240 85.113 0.0 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00890 K00413 - gmx:100789781 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00890 07 15416023 15420886 Cca07g00890 07 15416023 15420886 ECH