Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00889 ATGGTCTTGACACTCGACAATCGAAGTAGTCGAGATGACCAAGCGGAAACACGCGATGGCTGCTGCTGGTTCTGTTGTTCTCTTCATCTGAATCTGCCACATAACACAACTCCCTCACTTCGCTTTCACCCTTCAACCTTCGCTTTTCCCTCCGTTACCGTGACTGAGATGGCTGGAGGTGTTATTCAGCAGCTATTGAGGAGGAAACTTAACCCTCAATTTACTAACTCTTCCTTGTTGACACCCATCATAGCAAAGAAAGATGATGCTGGCTCCACTGGCAATAGGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTATGTCAGGCTTTTTCAGTTTTGCATCAACAGCAGCAGCTGATGAAGCTGAGCATGGCTTGGCATGTCCAAGCTATCCATGGCCTCACAAGGGAATTCTTAGTTCATATGATCATGCTTCGATTCGTCGGGGTCATCAAGTTTATACACAAGTCTGTGCTTCCTGCCATTCTATGTCTTTGATATCATACCGTGATTTGGTTGGTGTTGCTTATACAGAAGAAGAGGTAAAGGCTATGGCAGCTGAGATTGAGGTGGTTGATGGCCCTAATGATGAGGGAGAGATGTTTACACGCCCTGGTAAACTCAGCGATCGTTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGAGCTTATCCTCCTGATCTAAGTCTTATTACTAAAGCCCGTCACGACGGTCAGAACTATGTTTTTGCCCTTCTAACTGGTTATCGTGACCCACCTGCCGGTGTTTCGATAAGAGAGGGACTTCATTATAATCCTTATTTTCCTGGTGGAGCAATTGCCATGCCTAAAATGCTTAATGATGGTGCTGTGGAGTATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAAGATGTTGTGTCATTCTTATCTTGGGCCGCGGAACCCGAAATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCTATTACCGTCGGTTGAAGTGGTCAGTTCTAAAGTCTCGCAAGCTGGTTCTTGATGTTGTCAACTAG 1092 0.456 MVLTLDNRSSRDDQAETRDGCCWFCCSLHLNLPHNTTPSLRFHPSTFAFPSVTVTEMAGGVIQQLLRRKLNPQFTNSSLLTPIIAKKDDAGSTGNRSLRALALIGAGMSGFFSFASTAAADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEEVKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00889 363 Gene3D - 123 318 IPR036909 GO:0009055|GO:0020037
Cca07g00889 363 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 60 363 - -
Cca07g00889 363 Pfam Cytochrome C1 family 134 350 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 SUPERFAMILY Cytochrome c 127 317 IPR036909 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 268 279 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 279 298 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 132 151 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 230 254 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 152 171 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 299 318 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 197 217 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 PRINTS Cytochrome C1 signature 318 333 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 318 362 IPR021157 -
Cca07g00889 363 ProSiteProfiles Cytochrome c family profile. 146 253 IPR009056 GO:0009055|GO:0020037
Cca07g00889 363 PANTHER CYTOCHROME C1 60 363 IPR002326 GO:0009055|GO:0020037
Cca07g00889 363 Gene3D - 319 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00889 Cca-Chr7 15397242 15409163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00889 57 363 Chloroplast and Mitochondria Gene Families AT3G27240 84.790 8.75e-180 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00889 K00413 - gmx:100777056 568.926