Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00888 ATGGGTACGCCAACTACGAGGTTGTATCATCACCACCACGGACACTCCTCTGCCTCCAAATTCATCATCTTCTTCTGCCTCTCTGCTTTCATTGGCCTCGCTCTCATCGCCAACCTCTTCCGCGCCTCCCTCTCTTCCCACTACCTCTCCATCGCCACTAACTGGGTCGACACCAATGCCCCCCTTGTTCTCATCCCCAAGGACCCCGCCACACCCAAAACCAACAAAGAAAAAGATGGGAAGGGTGTAAAAAGGAGGGGTCCCGAGAGATTCCTTTCGTCCACATTTGCAGATTTGCCTGCCCCCGAATGGCATTGGGAGCAGATGCCATCGGCTCCGGTGCCTCGGCTTGATGGGTACTCTATACAGATTAAGAATATGTTTTATGTGTTTGGAGGATATGCCCATCTTGACCATGTGCACTCGCATGTTGATGTGTTCGATTTCAGCATCAACAAGTGGGTAGATCAGATTCAAATGCCAAAGGAGATGGCTAATTCACATTTGGGCATAGCGACTGATGGGAGGTATATATACATTGTCTCGGGACAATATGGTACCCAATGCAGAGGTCCTACTGCTGCTTCCTTTTCACTAGACACTGCAACAAAGAAATGGAAACCTTTGCCACCATTGCCAGCTCCCAGGTATGCTCCTGCAACTCAATTATGGAAAGGAAGACTTCATGTCATGGGAGGTAGCAAGGAGAATCGCCATGAACCTGGATTAGATCATTGGAGTTTGGCTGTGAAGGATGGTGATGCATTGGAGCAAAAATGGCGGGATGAAGTTCCCATTCCACGTGGCGGACCGCATAGGGCATGCATTGCAGTTGATGATCGACTTTTTGTTATTGGTGGACAAGAGGGTGATTTTATGGCTAAACCCGGTTCACCTATATTCAAGTGTTCACGCAGGCTTGAGGTGGTCTATGGAGATGTTTATATGCTGGATGCAGAAATGAAATGGAAAATTTTGCCAGCTATGCCAAAACCAAATTCGCACATAGAGTGTGCATGGGTAATTGTCAACAATTCAATTATTATCACTGGAGGTACCACAGAAAAACACCCAGTGACAAAAAGGATGATGCTGGTTGGGGAGGTTTTCCAGTTTCATTTAGACACATTGAAATGGTCAGTGATTGGAAAGCTTCCTTACCGTATAAAAACCACATTAGCTGGTTTTTGGGATGGATGGCTATACTTCACATCAGGGCAAAGGGACAGAGGGCCAGATAACCCACAACCGAGAAAGGTCGTTGGAGATATGTGGAGAACGAAATTACAATTACCGTGCTTGATGAGGATAAGAGGTCATGAAAACATAAGCCACTGTTCAAGGTCCAGTATGAGCATAGGTGCTGTGCTTGATTTGAGTTCACAAATGGGAAAGCATCAAAAGATAGCCATGGAAATTGCAGCCCAAGAGTTCAATCGGTTGAGTTGTTCCAAGCTGGATTTGGAGATTAAAAATTCCCACGGGAATTCACTTCAAACTGTTTCTAGTGCTATGGATCTCGCCCAAAGCAAGAAAGTCTTAGCCATCATAGGCACAATAACACATATTGAAGCAACTCTAGCAAGTGCACTCAATGACACCATAAAAAATATTCCTATCTTGTCTTTAATTTCACCTGTAGCCAGATCAGAGCACTTATCTCCTCTAATGCCATACTTCATCCAAGTGGGATATGATATCAACCTTCACATCCAATGCATTGCAGCCATTGTAGGAGAATTCAAATGGAGAAAGGTGACAATAATCTATGAACTTGATAACTGGTTTTCCTCTAATCCAGGGATGCTACTTAACCTCTCAAATTCTCTTAGACTTGTTGGTTCTGATATTGATAATCATATAGCTTTCCCTTCCTTGTTCTCACTATTAAACCCAAAATTTACCATTGAATATGAGCTTAATAAACTAAAAAAGAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGCTGGCTAATGCACTTTTTGAGACAGCAAATCAAATGGGTTTAATGGGAAAAGGTTGCGTGTGGATTATCCCAGATGGGGTTGCTGGCCTTCTTGATTCAGTTAAATCATCTGCTATACTTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCATGGAAACAAGTAAGGAATTTAGAAAGTTCAAATTCAAATTTCGAAGAAGGTTTTTGTTGGAGTTCCCTGAAGAAGAGAACAATAACCCAAGTTTTTTTGCACTTCAATCGTATAAAGCAACTTGGGCAGTTGCTCAAGCTACAAGGAAATCACAAGGGAATAAGTTAACCCATGAACAATTATTCAAAAGTAATATCTCAAGGATTGGTAGATTAAAACAATCACATGCCTTCAATATAATTAATGTTGTGGGTAAAAGTTATAGAGAGTTGGCTTTATGGTCTCTATCACTAGGTTTCTCCAAAAGCCATGTTACACAACAACTAACAGAGATGAACAAAAATAGTGCTTCTAGCGAAGTTTTAAGTAGTGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGACTCACAGTTCCCAAGAAAGGACACTTCAAATTGGAGTGCCTGCAAATGGTGCCTTCACTGAGTTTGTGAATGCAACATATGATAATGAAAGGAATAAAACTTCTTTCTCAGGATTCTCAATCAATGTCTTTAGAGCAGCCGTTCATAAGTTGCCTTATGACTTGGATTTCAATTTTGTCTCCTTCAATGGGTCTTATGATGAAATGGTAGAACAAGTCTATAATAAGACATTGGATGCTGCTGTAGGAGATACATCAATAGTGGCAGATAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATCTGGCATTGACACGGTAGTTACAAAGGAGTCAGCTAAATCAAAAGAAACATGGGTTTTTTTAGAAGCCTTCACAAAAGAAATGTGGTTGATAATGGTAGCATTGCACATTTTCGTGGTATTCGTCATTTGGTTGATCGAACGACAAGTGAATGCAGAACTAAAAGGATTAGGGTCCATGCTTTGGTTCATGGTCACTGTAATATTCTTTGCACACAGAGAACCAATTACAAGGCCCTTGGCTCGAATTGTGCTATCACCATGGTTATTTGCTATCCTCGTTATAACTAATACTTTCACGGCAAGTTTGACCTCTATGATAACCGTTGCACAACTAAAGCCATCTGTGTTAGATATCCAAACCCTCCTTAAAAGAAATTCTCCAGTTGGTTGTGATGGAAATTCATTCATTCAGAAGTATTTAATTGAGGTACACGGTTTCAAGCTTGAGAATATTAGGAAAATGAAATCCACAAGTGATTACCTTGTTGCCTTTCAAAACAAGGATATTGAAGCTGCCTTCTTTATTGTGCCCCACGCTAAGGTCTTTTTGGCAAAGTACTCATGCATGGGTTTCATTAAAGCAGGGAAGACTTTCAGACTTGGTGGCTTAGGTTTTGTATTTCCCAAGGGTTCCGCTCTAGCTATTGACATATCCGAGGCGTTGCTTAAAGTGATAGAGAGTACAGAAGTTGAACAACTAGAAAAAGATATGATAATGGTAGGTGGCAATTCCAGTTGTTCTCATTTAAAGAACGTGGCAAAAGATACTTCATCCATAGGATTTCAGCCTTTTCTTGCCCTATTTTGCGCATGTCCTATTGTTGCTATTCTAGCATTGTTATATAATATGATTTGTTTGTTGAAAAATAATGTGGAGACTTTCACTAGCTACATACATGTAAAATTAGCACCATTAAGGAGAATATGGAGATGGACCACCACATATTTTGCATGGATCTGTTCAAGACTACAATCAGCTAGAAGTATAAGAAGGGTAAGTACTGTCTTAGTATCAAGAAATGCAGAGGAGACTGTCATTAATAATCAACAAAGTGTAGTGGCTGTTGAGCTTGTATAG 3936 0.4073 MGTPTTRLYHHHHGHSSASKFIIFFCLSAFIGLALIANLFRASLSSHYLSIATNWVDTNAPLVLIPKDPATPKTNKEKDGKGVKRRGPERFLSSTFADLPAPEWHWEQMPSAPVPRLDGYSIQIKNMFYVFGGYAHLDHVHSHVDVFDFSINKWVDQIQMPKEMANSHLGIATDGRYIYIVSGQYGTQCRGPTAASFSLDTATKKWKPLPPLPAPRYAPATQLWKGRLHVMGGSKENRHEPGLDHWSLAVKDGDALEQKWRDEVPIPRGGPHRACIAVDDRLFVIGGQEGDFMAKPGSPIFKCSRRLEVVYGDVYMLDAEMKWKILPAMPKPNSHIECAWVIVNNSIIITGGTTEKHPVTKRMMLVGEVFQFHLDTLKWSVIGKLPYRIKTTLAGFWDGWLYFTSGQRDRGPDNPQPRKVVGDMWRTKLQLPCLMRIRGHENISHCSRSSMSIGAVLDLSSQMGKHQKIAMEIAAQEFNRLSCSKLDLEIKNSHGNSLQTVSSAMDLAQSKKVLAIIGTITHIEATLASALNDTIKNIPILSLISPVARSEHLSPLMPYFIQVGYDINLHIQCIAAIVGEFKWRKVTIIYELDNWFSSNPGMLLNLSNSLRLVGSDIDNHIAFPSLFSLLNPKFTIEYELNKLKKKSNRVFLIVHSSLELANALFETANQMGLMGKGCVWIIPDGVAGLLDSVKSSAILNMQGVIGFKTHFMETSKEFRKFKFKFRRRFLLEFPEEENNNPSFFALQSYKATWAVAQATRKSQGNKLTHEQLFKSNISRIGRLKQSHAFNIINVVGKSYRELALWSLSLGFSKSHVTQQLTEMNKNSASSEVLSSVYWPGGIQFVPKGWTHSSQERTLQIGVPANGAFTEFVNATYDNERNKTSFSGFSINVFRAAVHKLPYDLDFNFVSFNGSYDEMVEQVYNKTLDAAVGDTSIVADRYHLVDFSQPYVESGIDTVVTKESAKSKETWVFLEAFTKEMWLIMVALHIFVVFVIWLIERQVNAELKGLGSMLWFMVTVIFFAHREPITRPLARIVLSPWLFAILVITNTFTASLTSMITVAQLKPSVLDIQTLLKRNSPVGCDGNSFIQKYLIEVHGFKLENIRKMKSTSDYLVAFQNKDIEAAFFIVPHAKVFLAKYSCMGFIKAGKTFRLGGLGFVFPKGSALAIDISEALLKVIESTEVEQLEKDMIMVGGNSSCSHLKNVAKDTSSIGFQPFLALFCACPIVAILALLYNMICLLKNNVETFTSYIHVKLAPLRRIWRWTTTYFAWICSRLQSARSIRRVSTVLVSRNAEETVINNQQSVVAVELV 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00888 1311 SUPERFAMILY Periplasmic binding protein-like I 446 849 IPR028082 -
Cca07g00888 1311 Gene3D - 845 968 - -
Cca07g00888 1311 SUPERFAMILY Periplasmic binding protein-like II 833 1188 - -
Cca07g00888 1311 SUPERFAMILY Kelch motif 104 387 IPR015915 GO:0005515
Cca07g00888 1311 Pfam Ligand-gated ion channel 1189 1224 IPR001320 GO:0015276|GO:0016020
Cca07g00888 1311 Gene3D - 78 248 IPR015915 GO:0005515
Cca07g00888 1311 SMART GluR_14 857 1189 IPR001320 GO:0015276|GO:0016020
Cca07g00888 1311 Gene3D - 249 438 IPR015915 GO:0005515
Cca07g00888 1311 Pfam Galactose oxidase, central domain 115 154 - -
Cca07g00888 1311 Gene3D - 969 1089 - -
Cca07g00888 1311 SMART kelc_smart 346 399 IPR006652 GO:0005515
Cca07g00888 1311 SMART kelc_smart 177 226 IPR006652 GO:0005515
Cca07g00888 1311 SMART kelc_smart 127 174 IPR006652 GO:0005515
Cca07g00888 1311 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 449 1269 - -
Cca07g00888 1311 MobiDBLite consensus disorder prediction 67 86 - -
Cca07g00888 1311 PANTHER GLUTAMATE RECEPTOR 449 1269 - -
Cca07g00888 1311 Pfam Receptor family ligand binding region 468 774 IPR001828 -
Cca07g00888 1311 MobiDBLite consensus disorder prediction 71 86 - -
Cca07g00888 1311 Gene3D - 447 569 - -
Cca07g00888 1311 Gene3D - 570 741 - -
Cca07g00888 1311 CDD GluR_Plant 856 1191 - -
Cca07g00888 1311 Pfam Bacterial extracellular solute-binding proteins, family 3 879 1188 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00888 Cca-Chr7 15364978 15391801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00888 449 1233 Ion Channels AT2G29120 31.084 2.78e-115 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00888 - - gmx:100778941 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00888 07 15364978 15391801 Cca07g00888 07 15364978 15391801 ECH