Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00887 ATGTCACTAATTATCTTCTTCTTTGTCTTGCAATTGTTTGCATGCTCAAGGTTATCACTAGCCAATGAAGGAAGAGAACATTGCTTAATCACCCCAAGGCCCATTATGAACATGGGTGCTGTTCTTGATTTGGAGTCAATAATGGGTAAGCAACAGAAAATAGCAATGGAAATTGCAGTTCAAGAGTTCAATAACCTGAGTTGTTCCAAGATGCATTTGATTGTACAAAATTCCCGTGGAAATTCAGCTCGAGCAATTGCTAGTGTTATGGATCTAGCACAGAGAAAGCAAGTCTTAGCCATCATAGGAACAATAACTCACAATGAAGCAACTCTGGCCAGCGAGTTAAATGGCACCATAAAGAAAGTTCCTATATTGTCTCTAACTTCTCCCGCAGCCAACACAAAATTATTATCCCCTCAATTGCCACACTTTATCCAAATTGGCGATGATATCAAGATTCACATGCAATGCATCACAACCATTGTAGGAGAATTCAAATGGCGAAAGGTGACATCAATCTATGAACTTAATAACGGGTTTTCCTATGATCCAGGGACATTGCTTGGCCTCACTTATTCTCTTCGGATTGTTGGTTCTGAGATTGATAACCATTTAGCTTTGCCTTCCTTGTCCTCTTTATCAGACCCAAAAGCTACCATTGAAAAAGAGCTTCATAGGCTCAAAAGCAAGAGTAACCGGGTCTTCTTGATTGTGCAATCTTCTTTGGAGTTGGCTAACATACTTTTTGAGCAAGCAAAGCAAATGGGTTTGATGGAAAATGGTTGTGTGTGGATTATCCCAGATGGGGTTGCTAGCCTTCTTGATTCAGTTAACTCGTCTGTTATCCTTCACATGCAAGGAGTTATTGGATTTAAGAGACACTTCACGGAAACAAGTGAGGCATTTAGAAGGTTCAAGTTCAAATTTCGGAGAAGGTTTGCATTGGAGTTCCCTGAAGAAGAGAACATTAACCCAAGTTTCTTTGCATTTCAATCTTATAATGCAACCTGGGCTATTGCTCATGCTGCAAGAGAATCACAAGGGAAGTTTAAGTTTAATCTTGAACAATTATTCAGAAATCATCTCTCCAACAATAGTAAGTTACAACAATCACATGCATTCAATATAATTAATGTGATAGGTAAAAGTTATAGAGAGTTGGCATTATGGTCTCCAGCACTAGGTTTCTCCAAGAACCTAGTTAGTCAACAACTAACAGAGATAATGAAGACAAATATTACTTCAAATAGTGTTTTGAGTACAGTTTATTGGCCTGGAGGCTTACAATTTGTCCCTAAGGGATGGACTCGCAGCACTGAGGAGAGGACATTGCAAATAGGAGTACCTACAAATGGTACCTTTCATGAGTTTGTGAATGTCACACATGATCAGAACAAAAATAATACATCTATCACTGGTTTCTCAATCGATGTCTTTAAAGCAGTTGTTAATGCTTTGCCTTATGACTTGAAATACGAGTTTATTCCCTTCAATGGGTCTTATGATGAAATGGTAGAGCAAGTCTCCAATAAGACATTGGATGCTGCTGTCGGAGATACAGCAATAATGGCATATAGATATCATTTAGTGGACTTCTCACAACCTTATGTTGAATCTGGCCTCGACATGGTGGTTAGAGAGCAATCAGCAAAATCAAAAACATGGATCTTTTTGGACGCTTTCACAAAAGAGATGTGGTTGATGATGGCAACCTTGCACATTTTCGTGGGATTTGTCATCTGGTTGATCGAAAGGCAAGTTAATGCAGAACTACAGGGATTCGGGCCCATGCTTTGGTTTTTAGTCACTGTAATATTCTATGCACACAGAGAACCAATTACAAGCCCCATGGCTAGAGTTGTTATGGCACCATGGTTATTTGTGATCCTCATTGCAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACCATTTCGCAACTAGAGCCATCTATTTTGGATATCCAAACCCTTCAGAGAAGAAATTCCCCAGTTGGTTGTAATGGAAATTCATTTGTTATAAAGTATTTGACTGACGTACTAAAATTCAAGCCTGAGAACATAAGGAAATTTTACTCCATGAGTGATTACCCTGATGCCTTTCAGAACAAGTATATTGAAGCAGCTTTCTTTAGTGTGCCTCATGCTAAGGTCTTTCTGGCAAGGTATTCATGCAAGGGTCTAATCAAAGCTGGGAACACCTTCAGGCTTGGTGGCTTAGGTTTTGTATTTCCCAAGGGTTCTACTCTGGCTACCGACATATCCGAGGCATTGCTGAAAGTGATAGAGAGTGGAGAAACCGAACAACTTGAAAAAGATATGCTATCAATAGGAGGCAATGCAAAATGTTCTCCTTTAGAGAGCAGGGCAAAAGATGGAGATCTTCACAAGCTACATACATGTAACATTAGCACAATTAAGGAGAATATGGAAATGGACAACCCCATATTTTGTTCGGAGCTGTTCAAGACTCCAACCAGGGAGTACGAGGAGTGTAATTGCTGCCACAGTAATAAGAAATGA 2529 0.3954 MSLIIFFFVLQLFACSRLSLANEGREHCLITPRPIMNMGAVLDLESIMGKQQKIAMEIAVQEFNNLSCSKMHLIVQNSRGNSARAIASVMDLAQRKQVLAIIGTITHNEATLASELNGTIKKVPILSLTSPAANTKLLSPQLPHFIQIGDDIKIHMQCITTIVGEFKWRKVTSIYELNNGFSYDPGTLLGLTYSLRIVGSEIDNHLALPSLSSLSDPKATIEKELHRLKSKSNRVFLIVQSSLELANILFEQAKQMGLMENGCVWIIPDGVASLLDSVNSSVILHMQGVIGFKRHFTETSEAFRRFKFKFRRRFALEFPEEENINPSFFAFQSYNATWAIAHAARESQGKFKFNLEQLFRNHLSNNSKLQQSHAFNIINVIGKSYRELALWSPALGFSKNLVSQQLTEIMKTNITSNSVLSTVYWPGGLQFVPKGWTRSTEERTLQIGVPTNGTFHEFVNVTHDQNKNNTSITGFSIDVFKAVVNALPYDLKYEFIPFNGSYDEMVEQVSNKTLDAAVGDTAIMAYRYHLVDFSQPYVESGLDMVVREQSAKSKTWIFLDAFTKEMWLMMATLHIFVGFVIWLIERQVNAELQGFGPMLWFLVTVIFYAHREPITSPMARVVMAPWLFVILIATSTFTASLTSMMTISQLEPSILDIQTLQRRNSPVGCNGNSFVIKYLTDVLKFKPENIRKFYSMSDYPDAFQNKYIEAAFFSVPHAKVFLARYSCKGLIKAGNTFRLGGLGFVFPKGSTLATDISEALLKVIESGETEQLEKDMLSIGGNAKCSPLESRAKDGDLHKLHTCNISTIKENMEMDNPIFCSELFKTPTREYEECNCCHSNKK 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00887 842 SUPERFAMILY Periplasmic binding protein-like II 419 774 - -
Cca07g00887 842 Gene3D - 437 567 - -
Cca07g00887 842 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 779 - -
Cca07g00887 842 Gene3D - 741 773 - -
Cca07g00887 842 Pfam Bacterial extracellular solute-binding proteins, family 3 468 774 IPR001638 -
Cca07g00887 842 Gene3D - 153 325 - -
Cca07g00887 842 SMART GluR_14 446 779 IPR001320 GO:0015276|GO:0016020
Cca07g00887 842 Gene3D - 651 740 - -
Cca07g00887 842 Pfam Receptor family ligand binding region 53 350 IPR001828 -
Cca07g00887 842 Pfam Ligand-gated ion channel 564 747 IPR001320 GO:0015276|GO:0016020
Cca07g00887 842 CDD GluR_Plant 443 777 - -
Cca07g00887 842 Gene3D - 33 152 - -
Cca07g00887 842 PIRSF IGluLR_plant 1 370 IPR017103 -
Cca07g00887 842 PIRSF IGluLR_plant 351 804 IPR017103 -
Cca07g00887 842 SUPERFAMILY Periplasmic binding protein-like I 36 436 IPR028082 -
Cca07g00887 842 PANTHER GLUTAMATE RECEPTOR 34 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00887 Cca-Chr7 15336307 15348428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00887 92 801 Ion Channels AT5G11210 32.199 6.46e-112 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00887 - - gmx:100777873 1207.59