Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00872 ATGCTCAAAGTTTGTTCAATGAGATATTTTTACCTCTATCTTGTGGTTCTTACATGGTTTTTGTCCATCCCTAGTACCCATGAACTACAACTTGCTCAGACTCAAGTTCTGTTACAGTTAAGGAAGTATCTGGAGTACCCTACATCTCTGCTAATGTTGGAAAATTACTATGGAGACCTTTGTAGCCTTCCTGCATCTGCAAATGTGGCCATTAAATGTGAGGGTAATTCAGTAATTGAGCTTAAAATTATGGGAGATAGAGTTGTGAAGGTTGACAAGTTCAATGGATATGCAGTCCCCAATAAGACACTGTCAGTGAGCTTCTCTATTGATTCTTTTGTCACCACATTGACCAGGTTAACCAACTTAAGGGTCCTTAGATTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAAATTCATAGGCTGTCTTTGCTTCAAGTTTTGGATTTGAGCTCAAATTTCTTATATGGTTCAGTGCCACCAAGAGTGTCTACTATGGTCAAGCTTCACACACTGACGCTAGATGGCAATTATCTGAATAGCACAATGCCTGATTGGCTTGGTTCTTTGTCTAACTTAAATGTCTTGAGTTTGAAGAGCAACCACTTAAAGGGTTCATTCCCCTCCTCACTATGCAAGATTAGTAGCCTTGCTGATATTTCCTTGTCCCACAATAACTTGTCTGGTGCATTGCCTGATCTCACTGCTCTCTCTAGCCTACATGTACTTGATTTAAGAGAAAATCATTTAGATTCTGAACTGCCACTGATGCCTAAAGCAGTGGTCACAATTCTGCTAAGCAAAAATTCTTTTTCAGGTGAGATACCAAATCAGTTTGGTGAATTAGATCAGCTTCAACATCTAGATCTTTCATCAAATCATCTCAGTAGGATGCCCCCAAATGCCTTGTTCTCTTTGCCAAACATTAGCTATTTGAATTTAGCCAGCAATGAGTTAAGTGGACCCCTTCCACACGATTTAAAATGTGGTAGCAAACTTGGGTTTGTGGATATATCTAGTAACAAGTTAAAAGGTGAACTTTCTTCTTGCTTGATTCGTACTTCGGGTAGAATAGTTGTTAAGTATGGTGGAAACTGTTTATCAGTTGATTCTCAACCTCAGCGGCGAGGGACTTATTGTAAAGAATCAAGCTCAGGAAGGAAGAACTTCTTGAACTGGAAAATAGCTGCAGCAGTTGCCATGATTATTGTAATTATTCTTGTACTTTCAGCCTTAGGAGTTTTGTTTTATAGAAAATATCATTCAAGGGAAATGTATAATAGGCATGAGATGTTGCTAAAGGCTGTTCAAGATAACTCAACGACAGGAGTTTCTTCTGAACTCCTTGCTAGTGCTAGGTTCATTTCTCAAGTAGCGAAGCTAGGGACCCAAGCTACTCCTACCTGTAGACAGTTTTCAATTGAAGAGTTGAAGGAAGTCACTAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGATCCTTAGGAAAGATGTACAAAGGTAAACTAGAGAATGGATCCTATGTGGCGATACGATGTCTAGCTCTGTCAAAGAAATGCTCAATGCAAAATCTTAAAGCTCGGCTGGATTTACTATCAAAACTTCACCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGATGGACAAGATGATTCTAGTGGCCTCAAACTTCATCTTGTATATGAGTATGTGCCATATGGGAATTATCATACCTATATGTCAGAGAAGGCACTAAAGTGGTCTGAAAGATTAGCAATTTTAATTGGAGTTGCCAAAGCTGTGCACTTTTTACATACTGGAGTTATACCGGGTTGTTTTAGAAACCAACTAAAGGCACACAATGTTTTACTTGATGAACATCACATTCCCAAACTAAGTGACTATGGCATGTCCATGATCTCTGAGGAGATCGAATACCTTGAGGTAAAGGGAGAGAATCCAAAATCATGCCAAAGAGAAAAGTTAGAAGATGATGTCTATAATTTTGGATTAATATCGTTTGAATCACTTGTTGGACCCATAGCAAGTGAGAAAGGAGTGGAATTTTTTCTCCATGATAAGGTATCATTTGACAGTCAAGATGGTAGAAACAAAATAGTGGATCCAGTAGTGTTGAACACTTGCTGTCCAGAGTCATTATCAATTGCAATATCAATCACAACCAAATGCCTTTCCCCAGAATCCTCATCTCCTCCCTCTTTTGAGGATGTCTTATGGAACTTACAGTATGCAGCTCAAGTCCAGGCCATAGCAGATGCAGACCAAAAATCAGATTCTACAACATCCTAG 2307 0.3914 MLKVCSMRYFYLYLVVLTWFLSIPSTHELQLAQTQVLLQLRKYLEYPTSLLMLENYYGDLCSLPASANVAIKCEGNSVIELKIMGDRVVKVDKFNGYAVPNKTLSVSFSIDSFVTTLTRLTNLRVLRLVSLGIWGPLPDKIHRLSLLQVLDLSSNFLYGSVPPRVSTMVKLHTLTLDGNYLNSTMPDWLGSLSNLNVLSLKSNHLKGSFPSSLCKISSLADISLSHNNLSGALPDLTALSSLHVLDLRENHLDSELPLMPKAVVTILLSKNSFSGEIPNQFGELDQLQHLDLSSNHLSRMPPNALFSLPNISYLNLASNELSGPLPHDLKCGSKLGFVDISSNKLKGELSSCLIRTSGRIVVKYGGNCLSVDSQPQRRGTYCKESSSGRKNFLNWKIAAAVAMIIVIILVLSALGVLFYRKYHSREMYNRHEMLLKAVQDNSTTGVSSELLASARFISQVAKLGTQATPTCRQFSIEELKEVTRNFDLSTYIGEGSLGKMYKGKLENGSYVAIRCLALSKKCSMQNLKARLDLLSKLHHPNLVSLLGHCIDGDGQDDSSGLKLHLVYEYVPYGNYHTYMSEKALKWSERLAILIGVAKAVHFLHTGVIPGCFRNQLKAHNVLLDEHHIPKLSDYGMSMISEEIEYLEVKGENPKSCQREKLEDDVYNFGLISFESLVGPIASEKGVEFFLHDKVSFDSQDGRNKIVDPVVLNTCCPESLSIAISITTKCLSPESSSPPSFEDVLWNLQYAAQVQAIADADQKSDSTTS 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00872 768 Gene3D Ribonuclease Inhibitor 166 262 IPR032675 -
Cca07g00872 768 SUPERFAMILY L domain-like 114 368 - -
Cca07g00872 768 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 5 764 - -
Cca07g00872 768 ProSiteProfiles Protein kinase domain profile. 486 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00872 768 Pfam Leucine rich repeat 265 321 IPR001611 GO:0005515
Cca07g00872 768 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Cca07g00872 768 Gene3D Ribonuclease Inhibitor 263 387 IPR032675 -
Cca07g00872 768 Gene3D Phosphorylase Kinase; domain 1 456 569 - -
Cca07g00872 768 Gene3D Ribonuclease Inhibitor 32 165 IPR032675 -
Cca07g00872 768 Pfam Protein tyrosine and serine/threonine kinase 488 654 IPR001245 GO:0004672|GO:0006468
Cca07g00872 768 Gene3D Transferase(Phosphotransferase) domain 1 572 767 - -
Cca07g00872 768 PANTHER OS07G0166700 PROTEIN 5 764 IPR045272 GO:0004714|GO:0006468
Cca07g00872 768 SUPERFAMILY Protein kinase-like (PK-like) 468 747 IPR011009 -
Cca07g00872 768 SMART LRR_typ_2 239 262 IPR003591 -
Cca07g00872 768 SMART LRR_typ_2 192 216 IPR003591 -
Cca07g00872 768 SMART LRR_typ_2 284 307 IPR003591 -
Cca07g00872 768 SMART LRR_typ_2 144 168 IPR003591 -
Cca07g00872 768 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00872 Cca-Chr7 14862579 14868096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00872 12 715 Miscellaneous Gene Families AT5G14210 55.448 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Cca07g00872 PK_Tyr_Ser-Thr 8.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00872 - - gmx:100813412 1252.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00872 07 14862579 14868096 Cca07g00872 07 14862579 14868096 ECH