Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00867 ATGGCCACAGTAGAATTCATCATTGCATTTCACATGAAGCCTTTGGTTTTTCTCCTTTGGCTCTTTGTCCCCTCATTGGGCAAAGACTTGCTTAGTTGTGAGACAACTTCACCTGATACCTCTGCCTACCATTGCATTCAAAATGTGCCACATAATAACAACCATAACCAATGTGCAACTTTTGCACTCTTTCTCACCAACTCTTACTATTCTTCTCTCTCCAACCTCACCTCTTATTTGGGACTCAACAAGTTTGTGGTAGCACAAGCCAATGGTTTTTCTGCTGACACTGAGTTTCTCTCCCTGGATCAGCCTCTCTTGCTACCAATTGATTGCAAATGCAAAGGTGGATTCTTTCAGGCTGAGTTAACCAAAATTACCATCAAAGGTGAGAGTTTCTATGACATTGCTGAATCACTAGAGGGCTTGACATCTTGCAAGGCTATTAGGGACATCAACCCTGGTGTGTCACCTTGGAATCTTGATGACAAAGTGAGATTGGTTGTCCCTTTGAGATGTTCTTGCCCTTTTTCGTCTCAAGTTAGACCACAGCCAAAGCTTCTGCTTTCTTATCCTGTGAGTGAAGGTGATACACTTTCCAATTTGGCCTCAAAGTTTAATGTTACCATAGAAGCTATTGTTTCTGCTAATAACATATCATCACAAACTAGAAGTCTTGCACTTGCACCCTTTACCTCTATTCTCATTCCACTTTATGGTAAGCCTGTCATTGGTCCTTTAGCTAAGCCTAAGGAACCAAATTCTGGATTTCAAACAGCCACCATCCCAGTAACAAGTCCTCACAAGAAGTCACCAATGTGGAAAACTGAATTGTGTATTGGCCTAGCTGGGGTTGCACTTGGAGTTTGCATTGCTTTTGCTGCAGCCTTTTTCTTTGTGAGATTGAAGCACAAGAAGGGGGAAGAGAATTCATGCAAAGAAAGAGATATGGAGCTGCAACATCTGAATCAAAGTGTGAGAACCACCTCAACTAGTGACAAGAAAGTTTCATTTGAGGGCTCCCAGGATGCTCTTGATGTGAAGATTGTGGATGCCACACCGCGCAAGATGTTGCTAGAGACATACACCAATGAAGATATGATAAAAGCAACCGAAGATTTCAGCTCAAGCAACCACATTGAAGGATCAGTGTACCACGGTCGTTTGAATGGGAAGAACATGGCAATCAAAAGAACAAAGGCAGAAACAGTGTCAAAGATGGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAATATACTAAGGCTTCTTGGAACAAGCATGTTGTTGGAGGAGGGGAAGGAACAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTTCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTAACATGGAGCCAAAGGCTCAAGATCTGCCTTGATGTGGCAAGTGCCTTGCAGTACATTCACCATGTTATGAATCCAAGCTATGTGCACAGAAACGTAAAGAGCAGAAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAAGTTGTGTTGAGAATGACACTGAGGACCCACATTTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTACTTGGCACCTGAGTATGTGCACCAAGGTGTGATTTCCCCAAGCATTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGTCAAACTCCTATAAGCAGGCCTAATGAGAAGGGGGAAGGAAGCATTTGGCTTAGTGATAAAATCAAGTCCATTTTGGTGTCTGAAAATGTGAATGATCTAAGGGAGTGGATAGACAGTGCATTGGGGGAGAACTATTCATTTGATGCAGCTGTGACACTTGCCAACATTGCAAGAGCTTGTGTAGAGGAAGATTCTTCTTTGAGACCAAATGCAAGGGAAATAGTTGAGAAGATATCAAGATTGGTGGAGGAATTACCACAAGGGGAACATAACATGTTAATGTGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAGTCTTGAATAA 2079 0.4242 MATVEFIIAFHMKPLVFLLWLFVPSLGKDLLSCETTSPDTSAYHCIQNVPHNNNHNQCATFALFLTNSYYSSLSNLTSYLGLNKFVVAQANGFSADTEFLSLDQPLLLPIDCKCKGGFFQAELTKITIKGESFYDIAESLEGLTSCKAIRDINPGVSPWNLDDKVRLVVPLRCSCPFSSQVRPQPKLLLSYPVSEGDTLSNLASKFNVTIEAIVSANNISSQTRSLALAPFTSILIPLYGKPVIGPLAKPKEPNSGFQTATIPVTSPHKKSPMWKTELCIGLAGVALGVCIAFAAAFFFVRLKHKKGEENSCKERDMELQHLNQSVRTTSTSDKKVSFEGSQDALDVKIVDATPRKMLLETYTNEDMIKATEDFSSSNHIEGSVYHGRLNGKNMAIKRTKAETVSKMDLGLFHDALHHHPNILRLLGTSMLLEEGKEQESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLKICLDVASALQYIHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMASCVENDTEDPHFYSTNPASWSLGYLAPEYVHQGVISPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLSDKIKSILVSENVNDLREWIDSALGENYSFDAAVTLANIARACVEEDSSLRPNAREIVEKISRLVEELPQGEHNMLMCESSSKPLVKAVENSLE 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00867 692 SUPERFAMILY Protein kinase-like (PK-like) 357 657 IPR011009 -
Cca07g00867 692 ProSiteProfiles LysM domain profile. 189 236 IPR018392 -
Cca07g00867 692 Gene3D Transferase(Phosphotransferase) domain 1 447 679 - -
Cca07g00867 692 SMART LysM_2 190 237 IPR018392 -
Cca07g00867 692 Pfam LysM domain 191 237 IPR018392 -
Cca07g00867 692 ProSiteProfiles Protein kinase domain profile. 370 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00867 692 CDD LysM 190 221 IPR018392 -
Cca07g00867 692 PANTHER PROTEIN LYK2 7 688 - -
Cca07g00867 692 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 688 - -
Cca07g00867 692 SUPERFAMILY LysM domain 190 222 IPR036779 -
Cca07g00867 692 Gene3D LysM domain 189 237 IPR036779 -
Cca07g00867 692 Pfam Protein kinase domain 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00867 692 Gene3D Phosphorylase Kinase; domain 1 348 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00867 Cca-Chr7 14770519 14772732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00867 52 685 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.274 3.84e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca07g00867 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00867 - - gmx:100816082 1209.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00867 07 14770519 14772732 Cca07g00867 07 14770519 14772732 ECH