Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00850 ATGCCGGAAGAAACGACGTCGATCGACTACGTGATGGAGGCCGCATCTGGGCCGCACTTTTCGGGCCTGAGACTGGACGGCCTGCTACCCTCCTCCCCCACTTCCGATTCAACCCTAACCTCCGATTCTCTCCCCAATCAACCCTTCGTCATAGGAGTCTCCGGCGGTACCGCCTCCGGGAAAACCACCGTCTGCGACATGATCATTCAGCAGCTTCACGATCACCGCGTCGTCCTCGACTCGTTTTATCGCGGGTTGAGACCCGAAGAGCAGGAACGCGTTCACGAGTACAATTTCGACCACCCTGATGCGTTTGACACGGAGCAGTTGTTAGAGTGCATGAGGAAGCTTATAAGTGGCCAGGGTGTTCATGTTCCAATTTATGACTTCAAAAAGCACCAACGCTCTTCTGAATATgattttattttagTTGACGTGGTACTCTTTGCTCAGGTTAATGCCTCTGATGTGATTATATTGGAGGGAATTCTCGTGTTCCATGATCAGGGTGTGCGGGATCTCATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTGGAGAGGGGCAGGGATATAAACTCTGTTCTTGAGCAGTATGCAAAATTTGTTAAGCCTGCATTTGATGATTTTGTTCTTCCATCAAAAAAGTATGCTGACGTGATCATTCCACGTGGAGGCGATAATCATGTTGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGTCAACATGATCTATGCAAAATATATCCAAACGTGTATGTTATTCAGTCAACATTCCAGATAAGGGGAATGCATACATTGATTCGTGACCGAGACATATCAAAACATGATTTCGTATTTTATTCAGATCGACTTATACGCCTGGTTGTTGAGCATGGTCTAGGTCATCTGCCTTTCACTGAAAAGCAAGTGGTTACTCCCACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAAAAATTGTGTGGTGTTTCAATTGTTCGAAGTGGGGAGAGCATGGAAAATGCCCTTCGTGCATGTTGTAAAGGCATTAAAATTGGAAAAATTCTGATTCACCGGGATGGAGACAATGGAAAACAGCAGCTTATATATGAGAAGCTTCCCAAGGATATTTCAGAACGGCATGTCTTACTTCTTGACCCTGTCCTGGCCACTGGTAACTCTGCCAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAAAATCATATTATATTCCTGAATCTCATTTCTGCTCCCGAGGGAATCCATTGTGTGTGTAAAAGGTTTCCATCACTGAAGATTGTCACATCTGAGATTGACGTTGAATTAAACGAAGAGTATCGTGTTATCCCAGGTTTGGGTGAATTTGGTGATCGCTACTTCGGCACCGATGATTAA 1431 0.4444 MPEETTSIDYVMEAASGPHFSGLRLDGLLPSSPTSDSTLTSDSLPNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLDSFYRGLRPEEQERVHEYNFDHPDAFDTEQLLECMRKLISGQGVHVPIYDFKKHQRSSEYDFILVDVVLFAQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHRDGDNGKQQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPENHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVELNEEYRVIPGLGEFGDRYFGTDD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00850 476 Gene3D - 258 474 IPR029057 -
Cca07g00850 476 Pfam Uracil phosphoribosyltransferase 272 474 - -
Cca07g00850 476 CDD UMPK 50 254 IPR000764 -
Cca07g00850 476 Pfam Phosphoribulokinase / Uridine kinase family 50 242 IPR006083 GO:0005524|GO:0016301
Cca07g00850 476 ProSiteProfiles UvrC family, homology region profile. 160 243 IPR001162 GO:0009381
Cca07g00850 476 Gene3D - 45 257 IPR027417 -
Cca07g00850 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 247 IPR027417 -
Cca07g00850 476 TIGRFAM udk: uridine kinase 48 254 IPR000764 -
Cca07g00850 476 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 33 473 IPR029930 GO:0004849|GO:0044206
Cca07g00850 476 SUPERFAMILY PRTase-like 257 475 IPR029057 -
Cca07g00850 476 CDD PRTases_typeI 331 447 IPR000836 -
Cca07g00850 476 PRINTS Uridine kinase signature 200 211 - -
Cca07g00850 476 PRINTS Uridine kinase signature 75 86 - -
Cca07g00850 476 PRINTS Uridine kinase signature 186 196 - -
Cca07g00850 476 PRINTS Uridine kinase signature 222 235 - -
Cca07g00850 476 PRINTS Uridine kinase signature 48 65 - -
Cca07g00850 476 PANTHER URIDINE KINASE 33 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00850 Cca-Chr7 14313877 14319915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00850 1 476 PRT Gene Family AT5G40870 83.164 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00850 K00876 - gmx:100780005 868.996