Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00842 ATGGGAGAGAATTCTAGGGAGTTTGGAGAAAACACAAAAATCAACCACAAGATGGAAGAAGTTGAAAGAGAAGAAGAAATAGACCCAGAAAGCAATTCACTGAATGAGCCACTGCTCAAGAGGAACCGCACACTGTCTTCCAACCCTCTTGCTTTGGTTGGAGAAAAAGTTTCCTACATAGAAAGCTTGGATTATGAGATCAATGAGAATGATCTATTCAAGCATGACTGGAGGAGCAGATCAAGAGTTCAAGTGTTGCAGTACATATTCTTGAAATGGTTACTAGCATTTCTTGTTGGTCTTCTCACTGGTGTTATTGCCACTCTCATAAATCTTGCTATTGAGAATATTGCGGGGTATAAGCTTCTGGCAGTTCTTAAATACATCCACAAAGAAAGGTACTTGACAGGTTTCCTATATTTCACGGGCATTAATTTCGTTTTGACATTTGTTGCTGCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCAGGACCTGGAATTCCTGAGATCAAAGCTTATCTTAATGGTGTTGATACTCCCAACATGTATGGAGCTACAACATTGATTGTTAAGATAATTGGAAGCATTGGAGCTGTCTCTGCAGGCCTAGATTTGGGAAAAGAAGGACCATTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGCCCCGACAATTACAGGATCAAATGGCGCTGGCTTCGATATTTTAACAATGATCGTGACCGTCGAGATCTTATAACCTGCGGTGCATCTTCAGGAGTTTGTGCAGCTTTCCGGGCTCCAGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTAGCAACCTGGTGGAGAAGTGCTCTCCTATGGAGAACTTTTTTTAGCACAGCTGTGGTGGTGATGGTTCTCAGGATATTCATTGAAATCTGCCATTCTGGAAAATGTGGCCTTTTTGGTGAAGGAGGATTGATCATGTTTGACGTAAGCAATGTCACAGTGAGGTACCATGTTATGGATATTGTCCTTGTTGTAGTCATTGGAATCATAGGCGGGGTATTAGGAAGCCTTTACAACCACGTGCTACACAAGATCCTCAGACGCTACAATCTCATTAATCAGAAAGGAAGACTACATAAACTCCTTCTCAGTCTTGCAGTTGCGCTCTTCACGTCAATGTGCCAATATGGTCTCCCATTCTTAGTAAAATGCACCCCATGTGATCCATCGCTTCTAGGGTCAGTCTGCCCTACCAATGGACGATCTGGAAATTTCAAACAGTTCAACTGCCCACCGGGCTCCTACAATGATCTTGCTACTCTGCTGCTTACCACTAATGATGATGCTGTTCGAAACATATTCTCAACCAACACCCCTCAAGAATATCAACCCATGTCTCTCCTAATTTTCTTTGTACTCTATTGCATTTTAGGACTAATTACTTTTGGAATTGCAGTGCCATCTGGGCTCTTCCTCCCTATCATTCTTATGGGCTCAGGTTATGGCCGCCTTCTCGGCATCTACATGGGACCTCATACAAACATTGACCAAGGGCTGTTTGCAGTACTTGGTGCAGCCTCCCTCATGGCTGGCTCCATGAGGATGACTGTATCCCTTTGCGTGATCTTTCTTGAGCTCACCAACAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTGGGAGACAGTTTCAACCCAAGCATCTATGAGATTATACTGCACTTGAAAGGCCTTCCTTTCATGGATGCAAATCCTGAGCCGTGGATGAGAAATCTCACTGTGGGTGAGCTTGTTGATGTAAAGCCATCAGTGGTTACCCTACACGGAGTAGAAAAGGTAGCCAAAATTGTAGATGTCTTGAAAAACACTACGCATAATGGTTTCCCTGTTATGGATGATGGGGTAGTACCACCAGTAGTAGGACAGGCCAATGGAGCAACAGAACTGCATGGACTGATTCTAAGAGCACATCTCATCCAGGCACTAAAGAAGAAGTGGTTCTTTAAAGAAAGAAGGAAGACAGAGGACTCAGAAGTGAGAGAGAGATTTACCTGGGTAGAGCTGGCTGAGAGAGAAGGAAGCATTGAAGGGGTGGCTGTGACCAGCGAGGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCCTTTACAGTGCTAGAGAGCATGTCAGTAGCAAAAGCAATGATCCTCTTCAGACAAGTTGGACTTCGCCATCTGCTTGTAGTACCCAAGTATCAAGCATCTGGGGTATCCCCGGTAATTGGGATCTTGACAAGGAAAGATCTGCTAGCCCACAACATTCTGACAGTCTTTCCACACCTGGCACAATCTAAGGGCAGAGAAAAGAGGAATTGA 2373 0.4408 MGENSREFGENTKINHKMEEVEREEEIDPESNSLNEPLLKRNRTLSSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFLKWLLAFLVGLLTGVIATLINLAIENIAGYKLLAVLKYIHKERYLTGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVMVLRIFIEICHSGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKILRRYNLINQKGRLHKLLLSLAVALFTSMCQYGLPFLVKCTPCDPSLLGSVCPTNGRSGNFKQFNCPPGSYNDLATLLLTTNDDAVRNIFSTNTPQEYQPMSLLIFFVLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVKPSVVTLHGVEKVAKIVDVLKNTTHNGFPVMDDGVVPPVVGQANGATELHGLILRAHLIQALKKKWFFKERRKTEDSEVRERFTWVELAEREGSIEGVAVTSEEMEMFVDLHPLTNTTPFTVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRKDLLAHNILTVFPHLAQSKGREKRN 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00842 790 SUPERFAMILY Clc chloride channel 70 585 IPR014743 -
Cca07g00842 790 Gene3D - 586 776 IPR046342 -
Cca07g00842 790 MobiDBLite consensus disorder prediction 9 23 - -
Cca07g00842 790 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca07g00842 790 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca07g00842 790 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca07g00842 790 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca07g00842 790 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cca07g00842 790 CDD ClC_6_like 61 583 - -
Cca07g00842 790 ProSiteProfiles CBS domain profile. 717 783 IPR000644 -
Cca07g00842 790 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cca07g00842 790 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 771 - -
Cca07g00842 790 Gene3D Clc chloride channel 83 585 - -
Cca07g00842 790 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 8 785 - -
Cca07g00842 790 SUPERFAMILY CBS-domain pair 587 770 IPR046342 -
Cca07g00842 790 SMART cbs_1 605 665 IPR000644 -
Cca07g00842 790 SMART cbs_1 720 773 IPR000644 -
Cca07g00842 790 Pfam CBS domain 719 769 IPR000644 -
Cca07g00842 790 PANTHER CHLORIDE CHANNEL PROTEIN 8 785 - -
Cca07g00842 790 MobiDBLite consensus disorder prediction 1 34 - -
Cca07g00842 790 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00842 Cca-Chr7 14257537 14262787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00842 3 785 Ion Channels AT3G27170 77.522 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00842 K05016 - gmx:100788620 1454.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00842 07 14257537 14262787 Cca07g00842 07 14257537 14262787 ECH
Cca07g00842 07 14257537 14262787 Cca08g01183 08 33966609 33971910 PCT