Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00825 ATGGGAAGAAGAAACGGTGGCAGGTCTCTGCAAGAAACTCTCCGCCGTCGACTTGACTCTTGCAAGTCCAAATACTCCACCGCCGAAGAAATCGCCACCCATCTCCGCTCAACTTACCCCGATTACCACCGAACAAAGCACCAAACCCTAATTCGATTCGTTCAGGAAGCTCTTCACTCCGCCGCCAAGCCCGATCACATTCCCACGCTCAAGCATTTTTCCGACGATGACGACGACCGAGACTTTCCAAGCCCCTCTCCGAAAAGACGGAAGGAAGAGGACGAAGACAGGGAAGAAGCGGTGGTGTCGTCTTCGGAGGATGCGGTTTTCGGGAAGAAGATGGAACCTGAGTTCGGCTTGAGGAAGACGGTGCTGCGAAACTCGTATAAGAAGATTGCGGCGGAGGAGAAGAACGTGGAATTGGAAGTGGGGGGTGGCAGGAAGGGTATTGTTGCTAGCAGTGTTGTGAATGAGGAAAGGAAGGAAGTGAGGGGTTCGGTTTCGAACGGTGAGGTGAAGGGGAAGGATGGACCTAGGTTTAGGGATTTGGGTGGGATGAAAGAGGTTTTGGAGGAATTGAAGATGGAAGTGATTGTGCCTTTGTGCCATCCCCAATTGCCTAGACAGTTAGGTGTGAGGCCAATGGCTGGCATTTTGTTGCATGGACCACCTGGTTGTGGGAAGACTAAACTTGCACATGCTATAGCTAATGAGGCTGGTCTTCCTTTCTATCACATTTCAGCTACTGAGGTTGTTTCTGGAGTCTCAGGTGCATCGGAAGAAAATATTAGAGAGCTTTTCTCTAAGGCGTACAAGACTGCGCCGTCGATTGTCTTTATTGATGAGGTTGATGCAATTGCTTCCAAGAGAGAGAATTTGCAGCGTGAGATGGAGAAACGAATTGTGACGCAATTAATGACTTGCATGGATCAATCAAATAGGCTTCTTCAAAAAGGAGACGAGTCAGAGAGCTCCGATGGTCAACATCCTGGATATGTTCTTGTCATTGGAGCTACAAATAGACCTGATGCTGTTGACCCTGCCCTGAGAAGGCCTGGACGGTTTGATCGTGAGATTATCATTGGCATTCCCAATGAATCTGCCAGGGAGGAGATCCTTTCCACGCTTACTAGCAATCTTAAAGTTGAGGGATTATTTGATCTACGGAAAATAGCCAGGGCTACACCAGGATTTGTTGGTGCTGATTTGGCAGCTCTGGTTAACAAGGCTGGTAATCTGGCAATGAAAAGAATAATTGATGAAAGGAAACGTGAATTATCTCAAGTTCTCATGAATGAGGGTGATGAAGACTGGTGGAGAGAACCTTGGTTGACTGAAGAAATAGATAAGCTTGCCATCAAAATGTCCGATTTTGAGGAAGCAGTCAAAATGGTGCAACCTTCATCAAGAAGAGAAGGTTTCTCTTCCATTCCTAATGTAAAATGGGAAGATGTTGGAGGGCTTGATTTTCTAAGACAGGAGTTTGAACGTTATATTGTAAGGCGTATAAAATACCCTGATGATTATGAGGGACTTGGGGTAGATCTTGAGACAGGATTTTTGCTTTATGGACCTCCTGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAGGCAGGGGCTAATTTTATTCATATTAAGGGACCTGAACTCTTAAATAAATATGTTGGAGAAAGTGAGCTTGGAGTTCGGACAATGTTTAGCCGTGCAAGGACATGTGCGCCTTGTATACTTTTTTTTGATGAGGTGGATGCTTTGACAACCAATCGTGGTAAAGAAGGTAGTTGGGTTATTGAACGACTGTTGAATCAGTTGCTTGTTGAGTTAGATGGGGCAGAGCAACGGCGAGGCGTTTTTGTTATTGGTGCTACAAATAGGCCTGAGGTGATGGATCGTGCTCTCCTACGGCCTGGTAGGTTTGGTAAACTTCTTTATGTTCCACTTCCAGGCCCAGATGAACGAGTTTTGATATTGAAAGCTCTTGCAAGGAAGAAGCCTGTTGATTCCTCTGTGGATTTGAGTGCTATAGCAAAAATGGAAGCTTGTGAAAACCTAAGTGGCGCTGATCTTTCTGCATTGATGAACGAGGCAGCAATGGCTGCACTTGAAGAGAAATTGACTGAGACAACTTACGATACAGTGACCATCAAGAAAAATCATTTTGAGGTAGCACTGAGTAAAGTCTCTCCGTCTGTGTCAGACAGGCAAAAGCACTACTATCAGCACTTGTCAGAGAGCTTTAAAGTAGCATGA 2259 0.4568 MGRRNGGRSLQETLRRRLDSCKSKYSTAEEIATHLRSTYPDYHRTKHQTLIRFVQEALHSAAKPDHIPTLKHFSDDDDDRDFPSPSPKRRKEEDEDREEAVVSSSEDAVFGKKMEPEFGLRKTVLRNSYKKIAAEEKNVELEVGGGRKGIVASSVVNEERKEVRGSVSNGEVKGKDGPRFRDLGGMKEVLEELKMEVIVPLCHPQLPRQLGVRPMAGILLHGPPGCGKTKLAHAIANEAGLPFYHISATEVVSGVSGASEENIRELFSKAYKTAPSIVFIDEVDAIASKRENLQREMEKRIVTQLMTCMDQSNRLLQKGDESESSDGQHPGYVLVIGATNRPDAVDPALRRPGRFDREIIIGIPNESAREEILSTLTSNLKVEGLFDLRKIARATPGFVGADLAALVNKAGNLAMKRIIDERKRELSQVLMNEGDEDWWREPWLTEEIDKLAIKMSDFEEAVKMVQPSSRREGFSSIPNVKWEDVGGLDFLRQEFERYIVRRIKYPDDYEGLGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELGVRTMFSRARTCAPCILFFDEVDALTTNRGKEGSWVIERLLNQLLVELDGAEQRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPGPDERVLILKALARKKPVDSSVDLSAIAKMEACENLSGADLSALMNEAAMAALEEKLTETTYDTVTIKKNHFEVALSKVSPSVSDRQKHYYQHLSESFKVA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00825 752 PANTHER AAA-FAMILY ATPASE 27 748 - -
Cca07g00825 752 Gene3D - 478 742 IPR027417 -
Cca07g00825 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 749 IPR027417 -
Cca07g00825 752 Gene3D - 165 362 IPR027417 -
Cca07g00825 752 CDD AAA 519 650 - -
Cca07g00825 752 Pfam AAA+ lid domain 386 421 IPR041569 -
Cca07g00825 752 Pfam AAA+ lid domain 672 724 IPR041569 -
Cca07g00825 752 Gene3D - 651 728 - -
Cca07g00825 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 468 IPR027417 -
Cca07g00825 752 CDD AAA 213 362 - -
Cca07g00825 752 ProSitePatterns AAA-protein family signature. 333 351 IPR003960 GO:0005524|GO:0016887
Cca07g00825 752 SMART AAA_5 214 365 IPR003593 -
Cca07g00825 752 SMART AAA_5 516 652 IPR003593 -
Cca07g00825 752 Pfam ATPase family associated with various cellular activities (AAA) 218 361 IPR003959 GO:0005524|GO:0016887
Cca07g00825 752 Pfam ATPase family associated with various cellular activities (AAA) 521 649 IPR003959 GO:0005524|GO:0016887
Cca07g00825 752 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 27 748 - -
Cca07g00825 752 MobiDBLite consensus disorder prediction 64 108 - -
Cca07g00825 752 Gene3D - 364 472 - -
Cca07g00825 752 ProSitePatterns AAA-protein family signature. 620 638 IPR003960 GO:0005524|GO:0016887
Cca07g00825 752 MobiDBLite consensus disorder prediction 65 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00825 Cca-Chr7 13866662 13871816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00825 451 750 Calmodulin-binding Proteins AT3G56690 45.033 4.70e-72 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00825 K14571 - gmx:100809594 1175.23