Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00807 ATGGATTGGCACGGGAAAGAGCTTGCTTGGGATCCACGTGGGTTGGAGTTGGCTAATGGTGAAGGGCAGAAGAATGAAGCAGCCTCAGTGGATTTGAGGCTTGGTGAGGAAAAACCGCTCCCAGATGGTGCTAAGGACGCAAAAGACTCAAAAACTGTGTCATCTCCATCTGGGTCATCAAAAAGGGCACGCCTTCAGAATGGATCACAGAACATGTGTTGTTCTGTTGATGGGTGCAGTTCTGACCTCAGTGACTGCAGAGAGTATCACAGGCGCCACAGGGTCTGTGAGAAGCACTCCAAAACCCCTGTGGTGCTGGTGGGGGGGAAACAGCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCATTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAGAGGCTTGATGGGCATAACAGGCGCAGGAGGAAGCCTCAGCCACCCTCTCTTTTCATGTCTGCTGAGAAATTCATGTATAATTACAAAGGACCTAGAATCCTACACTTTGGTAGCCCTGAGACATATGCCAACCCTCTTATGAGAAATATGTGGCCTGCTACTGCCAAAACTGGAGCAGAATCTGGTTATGATCCTCCAAGGCTTTTATACAGAATTGACAAGCATAAGCAAGATAAGGGACATCCTCTTTGGCAAGAAAATGACCCTAAAGTAGGCATTGGCTACGAAGCAATGCCTGGAACTCCCATTTCTCAGCCTGTTCATGGAACCATTGCCCCATCAATGGGCGGAAAGAGCGGCCGGAAGCTCTCTTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAGTCACAAAGTCCAGAGTTAAGTATGGTGCAATCTGGCATCACCTGTCCTATGCAGTCTCCAACAAGAACTGTGCATTTTGATGCTGTGAATGAGTATGCATGCCAAGAAACATCAAAAGATAAGAACAGTGGTCAAGTATTGGTTCTTGATGCAAACACAACCAACCTTCATTACAATGGAATGCTGCAAATGGGGCTCGATGGATTGGTTGAAAATGAGGACTCACTAACACTTCCCTTCTTGTGGGAGTAA 1095 0.474 MDWHGKELAWDPRGLELANGEGQKNEAASVDLRLGEEKPLPDGAKDAKDSKTVSSPSGSSKRARLQNGSQNMCCSVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMSAEKFMYNYKGPRILHFGSPETYANPLMRNMWPATAKTGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPKVGIGYEAMPGTPISQPVHGTIAPSMGGKSGRKLSSDAKPGSFDSGCALYLLSTLQSQSPELSMVQSGITCPMQSPTRTVHFDAVNEYACQETSKDKNSGQVLVLDANTTNLHYNGMLQMGLDGLVENEDSLTLPFLWE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00807 364 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Cca07g00807 364 MobiDBLite consensus disorder prediction 50 66 - -
Cca07g00807 364 Pfam SBP domain 74 147 IPR004333 GO:0003677
Cca07g00807 364 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 10 364 - -
Cca07g00807 364 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Cca07g00807 364 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Cca07g00807 364 MobiDBLite consensus disorder prediction 30 49 - -
Cca07g00807 364 MobiDBLite consensus disorder prediction 1 66 - -
Cca07g00807 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 364 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00807 Cca-Chr7 13451212 13454762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00807 74 172 SBP-box Gene Family AT5G50670 66.667 5.04e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca07g00807 SBP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00807 - - gmx:100798317 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00807 07 13451212 13454762 Cca07g00807 07 13451212 13454762 ECH