Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00798 ATGACCGATTCTTTTGTGACTTTTAACCTACAGAATTACATTGCAAAAATCACAGATTTTGGGTTGGCTAAATTGGGGCCTGCTGGGGGACAATCACATGTAACTACCAGGGTCATTGGCACGTATGGTTATGCTGCTCCAGAATTTGTGGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTGCTAGAAATGCTGACAGGCAAGCAGGCACTTGACACAGATCGGCCAACAGGCAAGCACAACCTAGTTAAATGGGCAAAGCCTTTTCTTTTCTCCAAAGGAAAGTTGAAAACCATTATGGATGCTATGATAGAAGATCAATATTCACCCAAGGCAGCATGGCAAGCAGCACAACTTACTCTAAAATGCCTAAAACCTAACCCTAACTTCCGTCCTTCTATGAAAGATGTACTTGAGGAATTGGAAGTCATTGAAGCTATCCTTGAAAAAAAATTGAAGGTGTTTAGTTATGCGGATCTGAAATCTGCAACAAAGAATTTTAGGCATGACACAGTGGTTGGTGAGGGTGGTTTTGGCATTGTCTACAAGGGATGGCTGGATGAGAAGACCCTAACCCCTGTGAGGGCAGGTTTTGGAAAGGTCGTTGCCATAAAAAAGTTGAAACCCGACAGCATGCAAGGGATTTTAGAGTGGCAGTCAGAAGTATACTTTTTAGGAATGCTTTCTCACCCCAACCTGGTCAAGCTATTGGGTTACTGCAGGGATGATGATGATAAGCTTCTTCTTGTGTACGAGTTCATGCCTAAGGGAAGCTTAAACAATCATCTATTTAGAAGAAATCCTAACTTAGAACCACTTTCATGGAACACCAGGCTTAAAATAGCTATTGGTGCAGCTCGGGCTCTAGCTTTCTTGCATGCCTCTGAAAAACAAGTCATATACAGAGATTTCAAGGCTTCACATATACTACTCGATAGGAATTATAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGGCCTTATGAAGGACAATCACACGTAACTACCAGGGTCATGGGCACGTCTGGTTATGCTGCTCCAGAATATGTGGCAACAGGGCACTTGTATGTGAAAAGTGATGTTTATGGGTTTGGTGTAGTGCTGCTTGAAATGCTGACAAGCATGAGGGCAATTGACGCAAATCGCCCAACAGGGCAGCATAACCTAGttgaattcgacctcaaatttgtgtaa 1221 0.421 MTDSFVTFNLQNYIAKITDFGLAKLGPAGGQSHVTTRVIGTYGYAAPEFVATGHLYVKSDVYGFGVVLLEMLTGKQALDTDRPTGKHNLVKWAKPFLFSKGKLKTIMDAMIEDQYSPKAAWQAAQLTLKCLKPNPNFRPSMKDVLEELEVIEAILEKKLKVFSYADLKSATKNFRHDTVVGEGGFGIVYKGWLDEKTLTPVRAGFGKVVAIKKLKPDSMQGILEWQSEVYFLGMLSHPNLVKLLGYCRDDDDKLLLVYEFMPKGSLNNHLFRRNPNLEPLSWNTRLKIAIGAARALAFLHASEKQVIYRDFKASHILLDRNYNAKISDFGLAKLGPYEGQSHVTTRVMGTSGYAAPEYVATGHLYVKSDVYGFGVVLLEMLTSMRAIDANRPTGQHNLVEFDLKFV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00798 406 ProSiteProfiles Protein kinase domain profile. 174 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00798 406 SUPERFAMILY Protein kinase-like (PK-like) 157 398 IPR011009 -
Cca07g00798 406 Pfam Protein tyrosine and serine/threonine kinase 177 383 IPR001245 GO:0004672|GO:0006468
Cca07g00798 406 SUPERFAMILY Protein kinase-like (PK-like) 12 152 IPR011009 -
Cca07g00798 406 ProSiteProfiles Protein kinase domain profile. 1 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00798 406 Gene3D Phosphorylase Kinase; domain 1 154 260 - -
Cca07g00798 406 ProSitePatterns Protein kinases ATP-binding region signature. 180 213 IPR017441 GO:0005524
Cca07g00798 406 Gene3D Transferase(Phosphotransferase) domain 1 5 153 - -
Cca07g00798 406 Pfam Protein kinase domain 15 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00798 406 PANTHER OS01G0588500 PROTEIN-RELATED 10 154 - -
Cca07g00798 406 PANTHER OS01G0588500 PROTEIN-RELATED 156 401 - -
Cca07g00798 406 Gene3D Transferase(Phosphotransferase) domain 1 261 404 - -
Cca07g00798 406 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 156 401 - -
Cca07g00798 406 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00798 Cca-Chr7 12944613 12947712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00798 160 399 Glycoside Hydrolase AT3G07070 53.942 7.67e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca07g00798 PK_Tyr_Ser-Thr 7.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00798 - - ccaj:109818278 808.905