Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00794 ATGCAGCACGTTGAGAACCTTTCACTGCCTGCAATAGAAGAGTTCTTGGAGGACTATCAAGGGTATTCATCATCCAAAGAGTCTTCTGACATTGCAAGTTCATCTGAATGCTTTGATTTGTCGTCCCAAATTCCACCCATGTTGGATGGCTTGACAATGCCAAATTCCTCAAGGTACCATGATGATGAAACCTCAGTGCATGGTGCAGCTGCTGGCTCTCGCTCTTCTCAAATTTCCCAAGAGAGCGACATGTATCACCAGATGGGGTCCATGGCTAGTGCCTCCTTGTCACAAGCTCTACAACAAGAACGCTACCACGAGAAACAGCAAAAACAACAGCAAGAGAATCTAATGCTGCCTATTCCAATCGGAATCGAACAGGAACAAGACAACGGGCTTCAACTGGTGCACCTGCTATTAGCGTGCGCTGAGGCAGTGGCAAAAGAGGAATACATGGTAGCGAGAAGGTACCTGCACCACCTGAACCGAGTAGTGACCCCTCTCGGTGACTCCATGCAACGCGTGGCAGCATGCTTCACCGACTCACTAAGCGCGAGACTAAATGCCACCCTCACTCCGAAACCCTCAAAACTCACTCCACCCTCGCCCTCAAACTCTCTCGAAGTCCTCAAAATCTACCAAATCGTCTACCAAGCTTGTCCCTACATCAAATTTGCCCACTTCACCGCCAACCAAGCCATCTTCGAAGCCTTCGAGACCGAGGACCGCGTCCACGTCATCGACCTCGACATCCTCCAAGGGTACCAATGGCCAGCCTTCATGCAAGCCCTCGCCGCCCGTCCCAGTGGTGCCCCGTTCCTCCGTATCACTGGCGTGGGCCCAACCCTAGACGGCGTCCGTGAAACTGGGCGGTGCTTGACAGAGCTAGCGCACTCCCTCCGCATCCCCTTCGAGTTCCACGCTGTCGGGGAACAACTCGAAGATCTCAAACCTAACATGCTGAATCGCCGAGTCGGCGAGGCCCTTGCCGTGAACGCCGTGAATCGCCTCCACCGAGTCCCCGGGAGCCACTTGGGGAATTTGCTCAGCATGATAAGGGACCAGGCGCCGAACGTAGTGACCTTGGTGGAGCAAGAAGCGAGCCACAACGGGCCTTACTTTCTAGGAAGGTTTCTAGAGGCCTTGCACTACTACTCGGCGATCTTTGACTCGCTGGACGCAACATTTCCGACAGAGTCGGCACAGCGGGCAAAGGTGGAGCAATACATATTCGCGCCGGAGATACGGAACATCGTGGCGTGCGAGGGCGCGGCGAGGTTCGAGCGGCACGAGAGGTTGGAGAAGTGGCGGAAGATTATGGAGGGGAAGGGGTTCAAGGGTGTGGCTCTGAGTCCTAACGCCGTTACACAGTCGAAGATTTTGTTGGGGTTGTATTCGTGTGAAGGGTATCGCTTGACCGAGGATAAAGGTTGTTTGCTTCTTGGCTGGCAGGATAGGGCCATTGTTGCTGCGTCTGCATGGCGGTGTTGA 1491 0.5419 MQHVENLSLPAIEEFLEDYQGYSSSKESSDIASSSECFDLSSQIPPMLDGLTMPNSSRYHDDETSVHGAAAGSRSSQISQESDMYHQMGSMASASLSQALQQERYHEKQQKQQQENLMLPIPIGIEQEQDNGLQLVHLLLACAEAVAKEEYMVARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNATLTPKPSKLTPPSPSNSLEVLKIYQIVYQACPYIKFAHFTANQAIFEAFETEDRVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGPTLDGVRETGRCLTELAHSLRIPFEFHAVGEQLEDLKPNMLNRRVGEALAVNAVNRLHRVPGSHLGNLLSMIRDQAPNVVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPTESAQRAKVEQYIFAPEIRNIVACEGAARFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWRC 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00794 496 ProSiteProfiles GRAS family profile. 126 495 IPR005202 -
Cca07g00794 496 MobiDBLite consensus disorder prediction 53 77 - -
Cca07g00794 496 PANTHER GRAS FAMILY PROTEIN RAM1 2 494 - -
Cca07g00794 496 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 494 IPR005202 -
Cca07g00794 496 Pfam GRAS domain family 135 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00794 Cca-Chr7 12805788 12807783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00794 129 496 GRAS Transcription Factor Family AT1G66350 44.385 3.09e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca07g00794 GRAS 6.7e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00794 - - ccaj:109815322 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00794 07 12805788 12807783 Cca07g00794 07 12805788 12807783 ECH