LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00783	ATGGAGCTCCAAAACCATTCCGAGTCTATTGGGTTTAGGTTTGATCCTACTGATGATATTCTTGCGGGTTACTACCTAAGGAGAATCTTAGCTCAATCACTCCCTAATGATGTCATTCAAGAATATGATGTGTTTCAAACTCAGCCTTGGGGGCTGCCAGGAGGTGAGAAGCATCTGAATTGGCTGAAGTTTTTCTTCTACAATATTGGGGCTCGTGTGTTCGAAAACCCTGATAAGAGAGTTGCTGGGAATGGCCAATGGAGAATAATGGAGAAAGATGAAGATTTTCAGCTCCCTACCAAACTGCAGTGGATTGCCAAGAGAAACATTTTGGTTTTCTGGGAAGCCAAAGGAAACCGTTTTACTGAAACAAATTGGATGATGCATGAGTTCCACCTTGCCCCAAAATCAAATCCATCTCAGATGACAGATTGGGCTGTGTATCGCATATTCAGCAAGGGGGCAAAAACACAAAAGATTGCAAAAAAGTATAGTGGGGAGACCTCGAATATAAACAATGTTGGAAAATCTGAGGATGTCACACAAAGTCATTGA	555	0.4198	MELQNHSESIGFRFDPTDDILAGYYLRRILAQSLPNDVIQEYDVFQTQPWGLPGGEKHLNWLKFFFYNIGARVFENPDKRVAGNGQWRIMEKDEDFQLPTKLQWIAKRNILVFWEAKGNRFTETNWMMHEFHLAPKSNPSQMTDWAVYRIFSKGAKTQKIAKKYSGETSNINNVGKSEDVTQSH	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g00783	184	ProSiteProfiles	NAC domain profile.	8	153	IPR003441	GO:0003677\|GO:0006355
	Cca07g00783	184	Gene3D	NAC domain	17	159	IPR036093	GO:0003677\|GO:0006355
	Cca07g00783	184	PANTHER	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	10	162	-	-
	Cca07g00783	184	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	10	162	-	-
	Cca07g00783	184	Pfam	No apical meristem (NAM) protein	10	133	IPR003441	GO:0003677\|GO:0006355
	Cca07g00783	184	SUPERFAMILY	NAC domain	6	153	IPR036093	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00783	Cca-Chr7	12401461	12404382	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g00783	11	159	NAC Transcription Factor Family	AT1G01720	33.742	1.93e-22	89.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Cca07g00783		NAM	4.5e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00783	-		-	ccaj:109807086	374.015