Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00781 ATGGAGCTTCCAAATGAAAGTGAGGCAAGAACCTATAGGCTCCCAATAGGTTACCGTTTTGATCCCACAGATGAAGTTCTCACAGGCTATTACCTTCGGAAGAAGATATTATCTCAACCACTTCCCCATAACCTCGTACCCGAATGTGATGTTTTCCAAACTGAGCCATGGAGGCTGCAAGGAGGAATGACGTCACTCCCCCAACTTGAGCAGTTGCGAAATGAACCACGCAACCGGATGAATCTTGTTGATTCTTTTTACAGTGAAAGATGGGAGAGGTATTTGAATTGGCAGAAGTTTTTCTTCTATGACCCCAAGGACCGTGTGTTTGAAAACCCTCAGAAGATTGGTGCTGGAAATGGAGAATGGAGAGGAGTTGAAAGAGGCCAGCAAATAGAGCTTTCTGGCAAAGAGGTCATTGCAAAAAGAAATACTTACGTCTTCTGGGAAGGCAATGGTGACAATTTCACAAGAACTAACTGGCTCATGAATGAATTTCATCTGATTCTCAAATCTAACCCAACCATGAGATCTGGTATGGGCATTTATCGAATCTTTGAAGTAGAAGGAAGGAGAAGAAAGAAAGCTAGAGTGTCCCGGGAGGGGGCTTCTACAAACGGCAACAGTGGGGAAGTAATCGATGCCGTACCCACTGTCATTGATTTGACTGAGACGTGTGGCAGTGTGGGTGATACTCCTCCTCCTGGTTCACCATGTTGA 720 0.45 MELPNESEARTYRLPIGYRFDPTDEVLTGYYLRKKILSQPLPHNLVPECDVFQTEPWRLQGGMTSLPQLEQLRNEPRNRMNLVDSFYSERWERYLNWQKFFFYDPKDRVFENPQKIGAGNGEWRGVERGQQIELSGKEVIAKRNTYVFWEGNGDNFTRTNWLMNEFHLILKSNPTMRSGMGIYRIFEVEGRRRKKARVSREGASTNGNSGEVIDAVPTVIDLTETCGSVGDTPPPGSPC 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00781 239 Gene3D NAC domain 23 194 IPR036093 GO:0003677|GO:0006355
Cca07g00781 239 SUPERFAMILY NAC domain 11 186 IPR036093 GO:0003677|GO:0006355
Cca07g00781 239 Pfam No apical meristem (NAM) protein 15 168 IPR003441 GO:0003677|GO:0006355
Cca07g00781 239 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 14 61 - -
Cca07g00781 239 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 83 188 - -
Cca07g00781 239 ProSiteProfiles NAC domain profile. 14 188 IPR003441 GO:0003677|GO:0006355
Cca07g00781 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 61 - -
Cca07g00781 239 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 83 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00781 Cca-Chr7 12368582 12370392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00781 13 168 NAC Transcription Factor Family AT5G13180 31.847 5.48e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g00781 NAM 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00781 - - ccaj:109809200 504.597