Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00776 ATGGCAGACCCTGCAACGATCTACGAGTTCCTGAAGCAGCAGCCCTCAAGCGGTGCAAAGAGAGCAGCGCCACCGGCCACCACGACGCGCACCTTCCAATGCCACTTCTGCCACCGCAAGTTCTACACCTCCCAAGCCCTCGGCGGCCACCAAAACGCCCACAAGCTGGAGCGCGCCGCCGCCAGGAGAACCACCGTCAACATCAACGTCCCTTTCCACAATAATAATGGGCCTCTCCCCCTCAAGCCCACCGACCCCAAGCCCAGGCCCGAGCCCCTGGAGCCCGCTTCACCCCCCACCGGGCTTTTCTTCCACCACCCCCCCTACTGGCTCGACGTGGAGCCCTTGCAGTTCCAAACCACGCACGTGACCGCCACGCTCCCTCTTCCATTCCACGCTccttccccttccccttccccttccccttcTGCTTCCTCTCACAATGTTGATGCTTCTGAACACGTCAACCTCGACCTCACCCTTCGCTTGTGA 492 0.5813 MADPATIYEFLKQQPSSGAKRAAPPATTTRTFQCHFCHRKFYTSQALGGHQNAHKLERAAARRTTVNINVPFHNNNGPLPLKPTDPKPRPEPLEPASPPTGLFFHHPPYWLDVEPLQFQTTHVTATLPLPFHAPSPSPSPSPSASSHNVDASEHVNLDLTLRL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00776 163 MobiDBLite consensus disorder prediction 129 163 - -
Cca07g00776 163 PANTHER OS02G0182300 PROTEIN 13 163 - -
Cca07g00776 163 Gene3D Classic Zinc Finger 16 75 - -
Cca07g00776 163 PANTHER ZINC FINGER PROTEIN JAGGED 13 163 IPR045320 GO:0003700
Cca07g00776 163 SUPERFAMILY beta-beta-alpha zinc fingers 28 59 IPR036236 -
Cca07g00776 163 MobiDBLite consensus disorder prediction 81 96 - -
Cca07g00776 163 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Cca07g00776 163 MobiDBLite consensus disorder prediction 69 96 - -
Cca07g00776 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00776 Cca-Chr7 12246527 12247018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00776 30 132 C2H2 Transcription Factor Family AT5G14010 45.283 5.58e-14 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g00776 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00776 - - vra:106758350 171.4