Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00764 ATGATGATGGATGAGCGACAGCGAGAGAAGGTGCTTCACAAAACCGAGGCCTGTGGTTTCGTGGCAGGTGTTGGCTCCGACCTTGGACATGTCACCGTGCCAGGGGACAACACCAACAACGTTTCTCATTCTCATGGGTCGGGTCGGATCCACCACTTTGGTCTAGTTCCTGCTTTCGGAACTGTTCACAGGAAGAAGAGGATGCCGAGGCAACGAAGATCCTCTAACCCCTCTTTGCTCATGCACCAACCCAACCACCCTCGCTTtcttcctcctcctcctccctcttcctccgcctccgcctccgcctcctcgcacgtgcctctctccgccactctcctGCCCGCACGTGAAATCGATCATAGAAGGTTGAGATTCCTTTTCCAAAAGGAGTTAAAGAACAGTGATGTTAGCTCCCTTAGGAGGATGATATTACCAAAGAAAGCAGCAGAGGCTTTCCTTCCTGCCCTTGATTCAAAAGAAGGAATTGTAATCAGCATGAATGATATAGATGGTCTTCATGTATGGAGTTTCAAATACAGGTTTTGGCCTAACAACAATAGCCGGATGTATGTACTTGAAAATACTGGAGACTTTGTCAACACTCATGGCCTACGCTTTGGAGATTCCATTATGGTTTACCAAGATAGTCAAAACAATAATTATGTTATTCAGGCGAAAAAGGCTTCTGATCAGGATGAATTTATTGAAGAAACTAGTGACACCATCAATGATATCTTCCTTAATGATTATGAGGTGAACAAACCTGGTTGCTTCGATGTAACCTATCCTGCAGTGAACGATACAGGGATGTCATTCATATATGAAACTACCTTCTCAAATGACTCCCCACTTGATTTTTTGGGTGGATCAATGACAAATTTTTCAAGGATTGGACCAGTTGAAACCTTTGGCTCTGTGGAGAATTTGTCACTTGATGACTTCTATTAA 951 0.3985 MMMDERQREKVLHKTEACGFVAGVGSDLGHVTVPGDNTNNVSHSHGSGRIHHFGLVPAFGTVHRKKRMPRQRRSSNPSLLMHQPNHPRFLPPPPPSSSASASASSHVPLSATLLPAREIDHRRLRFLFQKELKNSDVSSLRRMILPKKAAEAFLPALDSKEGIVISMNDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVNTHGLRFGDSIMVYQDSQNNNYVIQAKKASDQDEFIEETSDTINDIFLNDYEVNKPGCFDVTYPAVNDTGMSFIYETTFSNDSPLDFLGGSMTNFSRIGPVETFGSVENLSLDDFY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00764 316 SMART B3_2 128 230 IPR003340 GO:0003677
Cca07g00764 316 Gene3D - 124 242 IPR015300 -
Cca07g00764 316 SUPERFAMILY DNA-binding pseudobarrel domain 126 224 IPR015300 -
Cca07g00764 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 316 IPR044800 GO:0003700
Cca07g00764 316 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Cca07g00764 316 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 61 316 - -
Cca07g00764 316 CDD B3_DNA 126 228 IPR003340 GO:0003677
Cca07g00764 316 MobiDBLite consensus disorder prediction 61 104 - -
Cca07g00764 316 Pfam B3 DNA binding domain 128 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00764 Cca-Chr7 11912133 11916297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00764 40 316 B3 DNA Binding Superfamily AT3G26790 53.968 3.23e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g00764 B3 1.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00764 - - gmx:100783961 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00764 07 11912133 11916297 Cca07g00764 07 11912133 11916297 ECH