Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00754 ATGGCCTCTTTCCCCCCTCTCGACCCCTTCTCACTTCCTTATCTCAACAATAACATCCCCTTTGACTCCTCTTTCGACTTCGCCCTCGAcacttcccttcccactccccctcctaatctcttttcccaggcccactcTAGCTTCGACTTCACGGAACTCGAAGCGCTGACTGGGCCTGGGACTGGGACTGCTGCTGTCCCGTTTGCGGACGGGACACCAGCAGCAAAGACGCTTTTTGAGAGGCGGGGGGCGGCGGAGATTCCCGGGCTggagacggtgaggcggacggggaggaagtgggaggagggggaaggcgaggATGGGAGTAGCGTTGACTTGGATGCTTCGGGGTTGAATTATGAGTCTGATGAGGGGAATGGTGTGAAGGGGAGTGAGAATAATAATGGTGGTGGGGATATCAAGGGCAAGAAGAAGAAGGGTCTTCCTGCTAAGAATCTCATGGCGGAGAGACGCCGCAGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATAATGAACTGGAGTCAACTCCACCTGGCTCGTTGCTGCCACCTTCTACTTCTACAAGCTTTTACCCTTTGACACCCACTCCATCAACCCTTCCTACCCGGGTCAAGGATGAACTATATCCTGGTGCCTTGCCAAGTCCTAAAAACCAAGCTGCAAAGGTTGAAGTTAGAGTAAGAGAAGGCAGAGCCGTCAACATTCACATGTTTTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAGGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTGGATGTGTTCAAAGCTGAGCAATGCATAGAAGGCCAGGATGTGCTCCCCGAGCAAATTAAAGCTGTGCTATTGGATTCAGCAGGATTCCACCATGGAATGATGTGA 1026 0.4532 MASFPPLDPFSLPYLNNNIPFDSSFDFALDTSLPTPPPNLFSQAHSSFDFTELEALTGPGTGTAAVPFADGTPAAKTLFERRGAAEIPGLETVRRTGRKWEEGEGEDGSSVDLDASGLNYESDEGNGVKGSENNNGGGDIKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLPPSTSTSFYPLTPTPSTLPTRVKDELYPGALPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCIEGQDVLPEQIKAVLLDSAGFHHGMM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00754 341 Coils Coil 190 210 - -
Cca07g00754 341 MobiDBLite consensus disorder prediction 122 148 - -
Cca07g00754 341 CDD bHLH_AtAMS_like 150 221 - -
Cca07g00754 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 216 IPR036638 GO:0046983
Cca07g00754 341 Pfam Helix-loop-helix DNA-binding domain 154 196 IPR011598 GO:0046983
Cca07g00754 341 Gene3D - 138 210 IPR036638 GO:0046983
Cca07g00754 341 SMART finulus 153 202 IPR011598 GO:0046983
Cca07g00754 341 CDD ACT_UUR-ACR-like 269 310 - -
Cca07g00754 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 99 338 - -
Cca07g00754 341 PANTHER BHLH TRANSCRIPTIONAL FACTOR 99 338 - -
Cca07g00754 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00754 Cca-Chr7 11720342 11724385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00754 74 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 68.273 3.89e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g00754 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00754 - - gmx:100804797 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00754 07 11720342 11724385 Cca07g00754 07 11720342 11724385 ECH
Cca07g00754 07 11720342 11724385 Cca08g01040 08 26424557 26428760 PCT