Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00749 ATGTCCATCTTGCCCTCACAAACCCAAGCACCATCTTCCTCCTCTTCGTCTGCGCCATCTcctaaccctaatccccaacatggaatccctaaccctattcctcaaccctTCCCTTCTCTCTCCCCTCCGCTCCACGTCGCTTTCGGATCTTTCCAGATCTCCGATAACCCAGGTTCATCGGCTCCAGCTGCTCAGGATTCTGGTGGATCTTCCGAAAAGGTGATGGAATTAGGGTCTCCAAGTGAAGTGATGGTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCATGGAGGAAGGCGGGCAGGAACGGGAATGGTTTCTTCTAATCATAGAAATCAACAAACTCATGGGTCTGTCAATCCTAATGGAAGTGCCCCTTCGGCTGGGAGAAAAGCTCAGACAATGAATGGGAATTACTTGCTGAATTTTCACTATGACCCGATATCCCGTTCTCAACCAAGGGGTCCTCCTCCTCCCCCTACAACAAGAAGCCTTCGGAAGAGGAAACCGTACAACAAGGATTTGTTTTTGCAGGCGAATTTCAAGTTCATGGTGCTAGATTCCGGAAATTATTCACCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTATGACATATTTGACCCCCTTTTCGGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAGGAGGATCACAAAGGTGATATCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAAGATTTATATACGGTTCACATCACAAATGTCAAACAGTATCAAGTAGGAGATAATGTTGAGTTCACCTTTTTAACCCGGAAAAAAGATTCATTTACTCTTTCGCATAAAAATAAATCAGGGACAAATATCCCATCACAGGGCAGTGGAGATATCTGTGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTGGATCTTTCAGTGAGGCATGCAATATCTGATCTAGATGGTTGGTTGGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAGTTAGAACAGAGGAAGAGGTATTGGAATGAGCAGACGTCTCGTGACTGTGAAAAATCTTCTAAGCTTATTGATTATGGACAGCAGATACCATCAGCAGGTGCAAATTCTATGGATACTGATGATGAAAACGTTTCCAATGGATCAAAAACTTCCTCTACTGATTTCCATGACCAAAATAAGGTTACGATGTTGGATAAATCAACTACTGGAGCCTGTTCAGATCAAAACTTAGATGTTGAGAAAGAGTTAATAGAGCAGGAAATGAATTTATCTTCTTCGTATGAGGAGAAAAATAGTATTCAAAGGCATTCAGATGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAACATGAAGTGTTTGCTTCATCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATTCTGCAATTGGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGGTACCGATTCCTTAGTCATTTTCCATTAACCACAACATTTCAGCTTTGTGAAGTTGATTTAAGTGATATGTTGCCTCCAGAAGCACTGGCCCCATTTATGGATGAAATCAAGAAGCGTGCAACTCAGAGGAAGCAGCTTGCAAAAAAGGAACAGAAGGATAAGATAAAAGCTGAAGCTACTGCTGCTTATTCTCTTCCCATATCATTAAGTTCTCAGTTTACTTCTCGCGATGATCCTCCAACATTCTCCATGGCTGACTTTGAAGCTCTAGGAAACTCAACTATATCCTCAAGTCCTCCCTTATCTGGGGAGAGAAATTCGTTCTCAAATGTTACCAGGCTCGGGTTTGCTGCTGGTCATGATTCTCCATCCTTACAAATTCCAGAAACTAGTGGTCTACATAATAACAATACGACCACCGATTCTTCTGTCATAACAGGTTTGAGAAGCGGGGAGACACAATCATACTCGAATGTTATATCAAGAGCAGAATCAAATGCTTCAGCAAAGACAAATGAGTTGGGGAAGAAAGGAAGGAAATCAAATCGAGTTCTTCTATCAACAGCTGGTGGTAGGCGATATTGA 2226 0.4142 MSILPSQTQAPSSSSSSAPSPNPNPQHGIPNPIPQPFPSLSPPLHVAFGSFQISDNPGSSAPAAQDSGGSSEKVMELGSPSEVMVSPQQNSRTRSRSHGGRRAGTGMVSSNHRNQQTHGSVNPNGSAPSAGRKAQTMNGNYLLNFHYDPISRSQPRGPPPPPTTRSLRKRKPYNKDLFLQANFKFMVLDSGNYSPESMDPDKMLQWEDIICMTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGEEDHKGDIWKRCPLCFVMISAKDLYTVHITNVKQYQVGDNVEFTFLTRKKDSFTLSHKNKSGTNIPSQGSGDICDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWNEQTSRDCEKSSKLIDYGQQIPSAGANSMDTDDENVSNGSKTSSTDFHDQNKVTMLDKSTTGACSDQNLDVEKELIEQEMNLSSSYEEKNSIQRHSDVVGDVKENDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSDMLPPEALAPFMDEIKKRATQRKQLAKKEQKDKIKAEATAAYSLPISLSSQFTSRDDPPTFSMADFEALGNSTISSSPPLSGERNSFSNVTRLGFAAGHDSPSLQIPETSGLHNNNTTTDSSVITGLRSGETQSYSNVISRAESNASAKTNELGKKGRKSNRVLLSTAGGRRY 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00749 741 MobiDBLite consensus disorder prediction 23 41 - -
Cca07g00749 741 SUPERFAMILY RING/U-box 221 275 - -
Cca07g00749 741 MobiDBLite consensus disorder prediction 1 134 - -
Cca07g00749 741 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Cca07g00749 741 PANTHER RING FINGER 10 FAMILY MEMBER 88 737 IPR039739 -
Cca07g00749 741 MobiDBLite consensus disorder prediction 52 67 - -
Cca07g00749 741 SMART ring_2 222 268 IPR001841 -
Cca07g00749 741 MobiDBLite consensus disorder prediction 107 134 - -
Cca07g00749 741 CDD RING-HC_RNF10 222 269 - -
Cca07g00749 741 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g00749 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 300 IPR013083 -
Cca07g00749 741 Pfam Zinc finger, C3HC4 type (RING finger) 222 268 IPR018957 GO:0046872
Cca07g00749 741 MobiDBLite consensus disorder prediction 406 436 - -
Cca07g00749 741 ProSiteProfiles Zinc finger RING-type profile. 222 268 IPR001841 -
Cca07g00749 741 MobiDBLite consensus disorder prediction 148 171 - -
Cca07g00749 741 MobiDBLite consensus disorder prediction 710 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00749 Cca-Chr7 11662993 11670733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00749 58 672 C3H Transcription Factor Family AT3G26730 53.882 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00749 - - gmx:100798764 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00749 07 11662993 11670733 Cca07g00749 07 11662993 11670733 ECH