Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00746 ATGGACAGGCTTGAGATCCCACATGATATCTCACAAGATTACACTATTTTAGTTGTCCTAGGGAAGGAGGAGCAGCCTAGGGATGATGTTGTTGTTGAAGATGAAACTAATGGCGGAACCCTGGTTGCTGCACTATCTTCCACCAGATCTCACCGCTGCAACACAACGCTGCCACGCGCCCCACCCGGCGACGATGCAACGCTGACGACGCTTAAGGCGGCCGCGTTTATGATCCCGATTCAAGTTTTGACTTTGAAGGGAAGGAGCAGCAGCCTAGGGATGATGTTGTTGTTGAAGATGAAACTAATGGTTCTGACTTTGAAGTATAGGGCCACTGATGCAATAATCAGCAGACTAGGGAAGCTTAAGTTGGTATTTGTCCCAGAAGATGGTGATGCTCCAACGGAGCTTGATGTTTACAATTTCAAAGGCCCAGGATTTGGCTCATTAGGTCTCATGACTTTTGTGCTGTTATCTTCTGATGGCAAGACATTGGAAGCTGAGGCAGCTCATGGAATTGTAACTCGACATTTTCAGTTTCATATTTATGTGGCCTTCTTCTTTTCAGTTCTTCAAGAGTTTCTGAACCGAGCCAAAGAATCAAACGTTCAAAGATATAAGATTCCAGATTTACAGCTTGTAAATCTTAAAGATTTGTTGGCGGACTTAAAGAGCAGTAGTGAGGAAATCTAG 693 0.4459 MDRLEIPHDISQDYTILVVLGKEEQPRDDVVVEDETNGGTLVAALSSTRSHRCNTTLPRAPPGDDATLTTLKAAAFMIPIQVLTLKGRSSSLGMMLLLKMKLMVLTLKYRATDAIISRLGKLKLVFVPEDGDAPTELDVYNFKGPGFGSLGLMTFVLLSSDGKTLEAEAAHGIVTRHFQFHIYVAFFFSVLQEFLNRAKESNVQRYKIPDLQLVNLKDLLADLKSSSEEI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00746 230 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 108 146 IPR004790 GO:0004450|GO:0006102
Cca07g00746 230 PANTHER NADP-SPECIFIC ISOCITRATE DEHYDROGENASE 146 181 IPR004790 GO:0004450|GO:0006102
Cca07g00746 230 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 145 181 - -
Cca07g00746 230 PANTHER ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL 108 146 - -
Cca07g00746 230 PANTHER ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL 146 181 - -
Cca07g00746 230 Gene3D Isopropylmalate Dehydrogenase 144 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00746 Cca-Chr7 11614396 11642387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00746 188 229 MYB Transcription Factor Family AT2G02820 52.273 4.41e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00746 K00031 - shx:MS3_0017307 79.7221