LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g00740	ATGAGTACTTCTGGATGGAGAGGTAACAAGCAAGGAATTCTAGATCTGCTTTATACGAAGGCATATATAGCTCCTAGGCATGGAAAGAGACCTCTCCCTTGTGATCATGCATCAAGGGAGAAAAGGGAAGAAGATTTCAATTTTCCTGTTCACACATCATCTAAGAAGCAAGAGGAAGAAGCTTCTCTATTCCCCTATATACCTCCAATCAACACTGGTGATGATAGCACCATCTCTACACCAATACCACAATATGGTCAACTAGCCTTGATTGAGACGCACGACCCATCCCAGCAGCCTTTAAATCAAGGCAATGCAAGAAAAAGACACTATAGAGGAGTTAGGCAGAGACCATGGGGGAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTCTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCCGCTGCTTACGATGCTGCTGCCTTGAAGTTCAAAGGCTCCAAAGCCAAGCTCAATTTCCCGGAACATGTTCTTGTTCCTCCCATGCCATCATCACATTCTAGTAACATTAATCACATTGACAATAATGTTAATAACTATGCTACTTCAGTATCATCATTGTGGTCACCACCACCATTATCGTTGTCATCATCAGAAGGGTTTCCAAATCTGATGCAGTATGCACAGCTTCTGTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCGGGTCTTCAGCATCAGCATCGTACTAATGAGGCTTTTCATGATCCGGGttcttctgctttgttctcgtcatcttcttcttcCACTGTGGCTGTGTCTGATCAACAGCAGATTGGAGATGGCACGAGTGTGGCGACTAAGGGGGGAGAGTGTTGTGATTCATGGGGTTTTAGAGGGAGTGGTTTTCATGATGATGACAAGAATTGA	915	0.4393	MSTSGWRGNKQGILDLLYTKAYIAPRHGKRPLPCDHASREKREEDFNFPVHTSSKKQEEEASLFPYIPPINTGDDSTISTPIPQYGQLALIETHDPSQQPLNQGNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLVPPMPSSHSSNINHIDNNVNNYATSVSSLWSPPPLSLSSSEGFPNLMQYAQLLWSRDDDDLQRVASGLQHQHRTNEAFHDPGSSALFSSSSSSTVAVSDQQQIGDGTSVATKGGECCDSWGFRGSGFHDDDKN	304

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca07g00740	304	PANTHER	AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2	88	286	-	-
Cca07g00740	304	Pfam	AP2 domain	110	159	IPR001471	GO:0003700\|GO:0006355
Cca07g00740	304	Gene3D	AP2/ERF domain	109	169	IPR036955	GO:0003700\|GO:0006355
Cca07g00740	304	PRINTS	Ethylene responsive element binding protein signature	111	122	IPR001471	GO:0003700\|GO:0006355
Cca07g00740	304	PRINTS	Ethylene responsive element binding protein signature	133	149	IPR001471	GO:0003700\|GO:0006355
Cca07g00740	304	CDD	AP2	110	169	IPR001471	GO:0003700\|GO:0006355
Cca07g00740	304	ProSiteProfiles	AP2/ERF domain profile.	110	167	IPR001471	GO:0003700\|GO:0006355
Cca07g00740	304	PANTHER	DNA-BINDING DOMAIN	88	286	IPR044808	GO:0003700\|GO:0009873
Cca07g00740	304	SMART	rav1_2	110	173	IPR001471	GO:0003700\|GO:0006355
Cca07g00740	304	SUPERFAMILY	DNA-binding domain	110	168	IPR016177	GO:0003677

Showing 1 to 10 of 10 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g00740	Cca-Chr7	11436554	11439395	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g00740	102	239	AP2-EREBP Transcription Factor Family	AT5G13330	53.846	3.81e-39	135

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Cca07g00740		AP2	1.8e-14	CL0081

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g00740	-		-	ccaj:109818971	514.612

Showing 1 to 1 of 1 entries

Show entries

Search:

Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Cca07g00740	07	11436554	11439395	Cca03g00273	03	3997562	4000065	ECH
Cca07g00740	07	11436554	11439395	Cca09g02350	09	48796705	48800011	ECH
Cca07g00740	07	11436554	11439395	Cca07g00740	07	11436554	11439395	ECH
Cca07g02357	07	52158938	52162730	Cca07g00740	07	11436554	11439395	ECH
Cca07g00740	07	11436554	11439395	Cca08g00860	08	19216532	19219058	PCT
Cca08g01038	08	26302397	26305038	Cca07g00740	07	11436554	11439395	PCT

Showing 1 to 6 of 6 entries