Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00722 ATGAACCCGCGCGTGACGACGTCGTCTAAGGCGAAGAAGAAGGCGGAAGAGAGCCAAACGGCGTGGGGAGGGAGGTACCTCGGGGTGAGGCGGAGGCCTTGGGGAAGGTACGCGGCGGAGATCCGCGACCCTGCCACCAAGGAGCGCCATTGGCTCGGTACTTTCGACACTGCCGAGGAAGCCGCACTGGCTTACGATAGAGCCGCACGTGCCATGCGCGGCTCACGTGCGCGCACTAACTTTGTCTACGCTGACACCACACCCGGCTCCTCCGTCACACCTATCCTCTCGCCCGACCAACCACCGCTCATCCAACCCGACCCTCTTCTCACGGTCGACCCGTTTTCCCTCCTCGGGATTCCCTCCGGTTCTTGTTCCTACGGTTATGAACATGAACGTGCCTCTGCCAGCGTGGCTAGTTCCCAGTTTAGCCAACAAGTGTTTTTCACGGataataataatattaatgataatgatataaataataataataataataataataataataataaAGAAAGTGGTAACACGATAGAGCTTCCTCCGTTGCCACCGGATATTACTAGCTCCATGGGTTACGAAACGGAACAGGGTTATGGATTTTATAATAGTGATATTAGTGGGTTTAATTATAATTACGTGGAGGATAATTACTCGCTTAGTCCAATGTTTGGTGCAATGGCAGAGAATGTGGATGCAGGGTCTCAAGTTTATGACTTCGGAAGCTCCTCCTATTTCTTTTGA 744 0.4973 MNPRVTTSSKAKKKAEESQTAWGGRYLGVRRRPWGRYAAEIRDPATKERHWLGTFDTAEEAALAYDRAARAMRGSRARTNFVYADTTPGSSVTPILSPDQPPLIQPDPLLTVDPFSLLGIPSGSCSYGYEHERASASVASSQFSQQVFFTDNNNINDNDINNNNNNNNNNNKESGNTIELPPLPPDITSSMGYETEQGYGFYNSDISGFNYNYVEDNYSLSPMFGAMAENVDAGSQVYDFGSSSYFF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00722 247 Pfam AP2 domain 26 74 IPR001471 GO:0003700|GO:0006355
Cca07g00722 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 7 247 - -
Cca07g00722 247 SUPERFAMILY DNA-binding domain 25 82 IPR016177 GO:0003677
Cca07g00722 247 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Cca07g00722 247 MobiDBLite consensus disorder prediction 153 177 - -
Cca07g00722 247 CDD AP2 25 81 IPR001471 GO:0003700|GO:0006355
Cca07g00722 247 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g00722 247 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Cca07g00722 247 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Cca07g00722 247 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Cca07g00722 247 MobiDBLite consensus disorder prediction 153 179 - -
Cca07g00722 247 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Cca07g00722 247 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 7 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00722 Cca-Chr7 11011819 11012817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00722 6 97 AP2-EREBP Transcription Factor Family AT5G13910 78.261 2.29e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g00722 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00722 K09286 - gmx:100792421 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00722 07 11011819 11012817 Cca07g00722 07 11011819 11012817 ECH
Cca07g00722 07 11011819 11012817 Cca08g01025 08 26010813 26011757 PCT