Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00719 ATGGATGAACAGGCAAGTAAGAAAATTGAGGATGCTAAGCTTGCAAGAGATTTCCAGACCACATTGCAAGAGTTCCAAAGAGTACAACAGCTTGCTTCTGAGCGCGAATCGACTTATAACCCTGCTGCCCCTTCTTCTTTACCTACAAGCTCTGGTTCTGGTGAGGAATCGGTTGGGTTGGACGTGGAAAGGCAACCTTTTATCAGAGAGCAAATGAGGCAAGAAATACTCCTATTGGATAATGAAATATCCTTCAACGAGGCCATGATTGAAGAAAGAGAACAGGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGAGCAGGGTGTTGTTATTGATGACATTCAGTCAAATATTGATGCTTCTGCTGGTGCAACAACTCATGCTAGGGTCCAGCTAGCCAAGGCTTCCAAAAATGTGAAATCCAAAACCTCATGGTGTTGGTGGGTGCTTGCAATTTTTGTGGTCGTGCTGATCATCTTACTCGTTTTACTCATTCTTTAG 543 0.4291 MDEQASKKIEDAKLARDFQTTLQEFQRVQQLASERESTYNPAAPSSLPTSSGSGEESVGLDVERQPFIREQMRQEILLLDNEISFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVHEQGVVIDDIQSNIDASAGATTHARVQLAKASKNVKSKTSWCWWVLAIFVVVLIILLVLLIL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00719 180 CDD SNARE_Qa 90 148 - -
Cca07g00719 180 MobiDBLite consensus disorder prediction 29 59 - -
Cca07g00719 180 Pfam SNARE domain 124 175 IPR000727 -
Cca07g00719 180 Gene3D - 81 180 - -
Cca07g00719 180 SUPERFAMILY t-snare proteins 6 142 IPR010989 GO:0016020|GO:0016192
Cca07g00719 180 Coils Coil 90 110 - -
Cca07g00719 180 SMART tSNARE_6 82 149 IPR000727 -
Cca07g00719 180 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 87 149 IPR000727 -
Cca07g00719 180 MobiDBLite consensus disorder prediction 29 56 - -
Cca07g00719 180 Gene3D - 1 45 - -
Cca07g00719 180 PANTHER SYNTAXIN-22-LIKE 4 179 - -
Cca07g00719 180 PANTHER SYNTAXIN 4 179 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00719 Cca-Chr7 10881052 10883168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00719 6 167 SNARE and Associated Proteins AT5G46860 57.669 6.74e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00719 - K08488 gmx:100787141 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00719 07 10881052 10883168 Cca07g00719 07 10881052 10883168 ECH