Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00701 ATGTCTCCAGCTACAGGTTCATCAAGATGGAGCCCTACCACAGAACAACTCATGATCTTGGAGGAATTGTACAAGAGTGGCATTAGAACTCCTAGTGCCTCTCAAATTCAGCAAATAACAACACACTTTTCCTTCTATGGCAGGATAGAGGGAAAGAATGTGTTCTACTGGTTTCAAAACCACAAAGCTAGGGATAGGCAGAAACTCAGAAGGAAACTcaccaagcaactacagctacagcagcagcaacaAGTTGATTAG 261 0.3678 MSPATGSSRWSPTTEQLMILEELYKSGIRTPSASQIQQITTHFSFYGRIEGKNVFYWFQNHKARDRQKLRRKLTKQLQLQQQQQVD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00701 86 ProSiteProfiles 'Homeobox' domain profile. 3 68 IPR001356 GO:0003677
Cca07g00701 86 Gene3D - 2 68 - -
Cca07g00701 86 Pfam Homeodomain 8 67 IPR001356 GO:0003677
Cca07g00701 86 SUPERFAMILY Homeodomain-like 8 68 IPR009057 -
Cca07g00701 86 PANTHER WUSCHEL-RELATED HOMEOBOX 3 1 84 - -
Cca07g00701 86 SMART HOX_1 5 72 IPR001356 GO:0003677
Cca07g00701 86 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 84 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00701 Cca-Chr7 10476743 10477003 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00701 1 75 Wox Gene Family AT2G28610 80.000 2.46e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca07g00701 Homeodomain 6.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00701 - - gmx:102663963 127.872