Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00688 ATGGGAAGCCCAGAATCCAATTTGCCACCCGGTTTCAGGTTCCACCCAACCGATGAAGAGCTCATTCTTCACTACCTTAGTAAAAAGGTAGCATCCATTCCCTTGCCCGTTTCCATCATTGCTGAGGTTGATATCTACAAGTTGGATCCATGGGACTTGCCAGCTAAGGCCACGTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACAGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAAGCCACTGGCACTGATAAAACCATACTGACATCATTGCATGGAGGTGGAACAACCCAAGACAACATTGGTGTTAAGAAGGCTTTGGTGTTCTACAAAGGTAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAGACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGACTGGGTGTTATGCCGGATTTACAAGAAATCCAAACATGCTCTAACATCAACAGAGGCAACAATAGGGGTAGGTGAGGTAGATCAAGCAGAAGAGAATCTATTCAAAGAGACCCTTTTGCCAATTTCAAAAACTCCTACAACTCCACCTCAGAACACATTAATATCTCAGAAATCTGTGTCCTTCTCCAACTTGTTAGATGCCATGGACTACTCTGTTCTGAGCAATTTCTTATCTGAGAATAATCATTCAAACCCACCAGGGGTTGGATCAAGTGCAGGCTTCAACACTGGGAATTTGGACCAACAATCCTCTCCAATCAATAGTTACATGTTTCAGAAGAACCCTTCAGCCCCCAACATGGAAATCATGAGGCCAAAGCGCCAAGTTTCAAGCATAGATGAGGACACGTTGTACCCATCAAAGAAATACTCTTGCAACTTCCCTAACATCAATGCCCAATATGAGAACCCACAATGGAACCACCTCATGAAGCAGTCCATGTTGAATCAGCGCTTACTCCTTGGTCCCCATCTTCAATTTCAGTGA 1020 0.4451 MGSPESNLPPGFRFHPTDEELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTILTSLHGGGTTQDNIGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNRPIKLKDSSMRLDDWVLCRIYKKSKHALTSTEATIGVGEVDQAEENLFKETLLPISKTPTTPPQNTLISQKSVSFSNLLDAMDYSVLSNFLSENNHSNPPGVGSSAGFNTGNLDQQSSPINSYMFQKNPSAPNMEIMRPKRQVSSIDEDTLYPSKKYSCNFPNINAQYENPQWNHLMKQSMLNQRLLLGPHLQFQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00688 339 PANTHER OS01G0104200 PROTEIN 6 278 - -
Cca07g00688 339 Pfam No apical meristem (NAM) protein 9 140 IPR003441 GO:0003677|GO:0006355
Cca07g00688 339 ProSiteProfiles NAC domain profile. 8 167 IPR003441 GO:0003677|GO:0006355
Cca07g00688 339 PANTHER NAC TRANSCRIPTION FACTOR 56 6 278 - -
Cca07g00688 339 Gene3D NAC domain 17 172 IPR036093 GO:0003677|GO:0006355
Cca07g00688 339 SUPERFAMILY NAC domain 5 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00688 Cca-Chr7 10045554 10047838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00688 4 339 NAC Transcription Factor Family AT3G04070 54.023 2.25e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g00688 NAM 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00688 - - gmx:100301906 609.372