Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00681 ATGGAAGAGCCTATTGTGTTGAACAAAGGTGAAGAGCCTCTAGATTTGCCTCCAGGCTTCAGGTTCCACCCTACTGATGAGGAGATAATTTCTTATTATCTCACTGAGAAGGTGAAGAATAGCGGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAACAAGTGTGAACCATGGGATTTACCAAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACAGAATCTGGGTACTGGAAGGCCACTGGAAAAGACAAGGAAATTTACAAAGGGAAAGGGAACCTTGTTGGTATGAAGAAGACCCTTGTGTTCTATAAAGGGAGAGCTCCAAAGGGGGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAAGGAAAATTTGCAAGTTATAGTCTTCCTAAGGCAGCAAAGGATGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATCTCAGAAAGACCTCAATTCCTGGACTTTTGAGGATAAACTCTCTTGGGGATGATCTTCTTGATTATTCTTCACTCCCACCTCTCATGGATCCTACTTATGTTaacaccaacgccaacaccaaccacaccaccactaacccaCTTTCATCAAATAAATCACAATCAGACGGCTATTATCTTCCCAGTTTCTCCATCAACAGCAACCACCACCACCACCTTCTGATGAAGCCACAAGACCACCACCAAAGAACCTACGAGATTCCCACAATTAACTACACTTCAAACTCCAACCAAGCCAATCTCAGCAACAACGTTAACCCAATGGGGAACAACACACTCTCACAGCCCTTAAACATGTTCAATGACTACTACATGCACCAAAACAGGATCAAAAGCTCCATCATGCCAAGTGTTGCAACAGGTTTTGGAaacaacaacaacaacaacCATGATCAAGCAATCCTAAGAGCCCTTTCAGCCAAGAACAACGACCACTTAGGTGAATTGGAGAAACAGTGCAAGATGGAGCAATTCTCCTCTAACCACTCACAAGACACAGGCTTAAGCAACGACAGAAACACTGACACATCCTCGGTGGTTTCGAAGCAAGACAACAATAACAACAACATGGGAGGAAATAGGGCATTGTACGAGGATTTTGAGGGTCCTTCTTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGAAGACTACTGA 1233 0.4169 MEEPIVLNKGEEPLDLPPGFRFHPTDEEIISYYLTEKVKNSGFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFASYSLPKAAKDEWVVSRVFHKNTDLRKTSIPGLLRINSLGDDLLDYSSLPPLMDPTYVNTNANTNHTTTNPLSSNKSQSDGYYLPSFSINSNHHHHLLMKPQDHHQRTYEIPTINYTSNSNQANLSNNVNPMGNNTLSQPLNMFNDYYMHQNRIKSSIMPSVATGFGNNNNNNHDQAILRALSAKNNDHLGELEKQCKMEQFSSNHSQDTGLSNDRNTDTSSVVSKQDNNNNNMGGNRALYEDFEGPSSVAPLSDLECLQWEDY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00681 410 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Cca07g00681 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 363 - -
Cca07g00681 410 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Cca07g00681 410 MobiDBLite consensus disorder prediction 347 389 - -
Cca07g00681 410 MobiDBLite consensus disorder prediction 347 383 - -
Cca07g00681 410 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 7 363 - -
Cca07g00681 410 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Cca07g00681 410 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00681 Cca-Chr7 9962601 9964945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00681 1 217 NAC Transcription Factor Family AT5G18270 71.239 2.71e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g00681 NAM 5.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00681 - - gmx:100784372 669.463