Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00678 ATGTCACTGTGTTGCCAAACCTCCATTTGGACTTCCCCAAAAGACAAAGCCCTACCTGGATTTTCTCATCTTTTCACCAACATCACCTTGAATATCCCAAACAGATCAAATGTTGCACTAATGTTTGACAAAAGAATCACTGCGTTTGCTGAAGATAAGTTCCGAAGAGATGGTATTGATGTGAAAACAGGATCCATGGTTGTGAAGGTATCTGATAAAGAAATTTCTACTAAAGAAATGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCCGTCTGGTCAACTGGTATTGGCACTCGTCCATTTATAAGAGATTTTATGTCACAAATTGGTCAGACTAACAGACGCGCCATAGCTACTGATGAATGGTTGAGAGTTGAAGCAACTAACAATGTGTATGCACTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATCGCCGCAATATTTAAGAAGGCTGACACTGACAATTCAGGGACTCTTACTGTCAAAGAATTTCAGGAGGTGTTGGCTGACATCTGTGAGAGATACCCTCAGGTGGAGCTATATCTAAAGAGTAAACAAATGCACGACCTTGCTGATTTGCTGACAGAGTCCAAGGGAGATGTTAAAAAAGAATCCGTTGAACTCAACATCGAAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCTGCTACAGCGCAGGTTGCATCTCAGCAAGGCACCTACCTGGCCAAGTGCTTTAACCGGATGGAAGAGTGTGAAAAAAATCCAGAGGGTCCAATCAGGTTCAGGGGAGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTTGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGTTCACAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTCAGCTGGCGCACAAGGGCATTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGACTCCAGTCAAATATGA 1053 0.4311 MSLCCQTSIWTSPKDKALPGFSHLFTNITLNIPNRSNVALMFDKRITAFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIRDFMSQIGQTNRRAIATDEWLRVEATNNVYALGDCATINQRKVMEDIAAIFKKADTDNSGTLTVKEFQEVLADICERYPQVELYLKSKQMHDLADLLTESKGDVKKESVELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00678 350 Gene3D - 195 349 - -
Cca07g00678 350 Gene3D - 24 194 - -
Cca07g00678 350 SMART efh_1 152 180 IPR002048 GO:0005509
Cca07g00678 350 Coils Coil 212 232 - -
Cca07g00678 350 SUPERFAMILY FAD/NAD(P)-binding domain 27 145 IPR036188 -
Cca07g00678 350 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Cca07g00678 350 SUPERFAMILY EF-hand 102 237 IPR011992 -
Cca07g00678 350 Pfam Pyridine nucleotide-disulphide oxidoreductase 35 150 IPR023753 GO:0016491
Cca07g00678 350 Pfam EF hand 153 179 IPR002048 GO:0005509
Cca07g00678 350 PANTHER NAD(P)H DEHYDROGENASE B2 27 350 - -
Cca07g00678 350 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Cca07g00678 350 PANTHER NADH DEHYDROGENASE 27 350 IPR045024 GO:0003954|GO:0006116
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00678 Cca-Chr7 9870106 9879754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00678 37 350 Chloroplast and Mitochondria Gene Families AT4G21490 79.365 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00678 K03885 - gmx:100800518 601.282