Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00674 ATGAACATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGAGCATGTCCTTGCTCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGTGTTTGTTGAGGACTGCTTTTCAAGCCCCCCAAGTTGTGTTTTTGTGCCTGCTAGTGTTAAAACCACAACCACAAGCAGCACCAACCCTTCAGGCACATTGAAGAGGCCCCAACAAAATGATTCTCCTTTGCAAAATTTTACTGTGCCAGGGAAGGCGAGGAGCAAAAGGAAGAGGCTTTCAGCCCCAAGAACCAAGGACCCTTTGAGCATGTGGTCACACCATTTGAACCCCCAAAATGAAGCCTTGAGTTCTGACCCTCCTCTACTGAAACAGGCTTATTGGTTGGCTGACAGTGAACTCATGATGCCTAAGCCAAAGGAGGAGACAAAAGAGGAAGTGGTGGTGGTGGAGAAGATTGTGAGCAAGGAAAGGTTTGGtgagtctgagtttgagtctgagtttgagtcttgCAATGGTCAACAACAACAGCTGCAGCAGCCTGTGGCAAGGAGGTGCACCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGGCCATTAGGGCCAAAGACACTGTGCAATGCATGTGGAGTTAGGTACAAGTCTGGGAGGTTGCTACCAGAGTATAGACCAGCCAAGAGTCCTACTTTTGTGAGCTATTTGCACTCAAATTCACACAAAAAAGTCATGGAGATGAGGATGGCTGTTTACCCTTCTTCCATTTCTAGTGACATGTAG 828 0.465 MNMDMCQNVSVSGECQQEHVLAPSCSSSLDDLFSAQNTEVDVELEWLSVFVEDCFSSPPSCVFVPASVKTTTTSSTNPSGTLKRPQQNDSPLQNFTVPGKARSKRKRLSAPRTKDPLSMWSHHLNPQNEALSSDPPLLKQAYWLADSELMMPKPKEETKEEVVVVEKIVSKERFGESEFESEFESCNGQQQQLQQPVARRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVYPSSISSDM 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00674 275 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Cca07g00674 275 PANTHER GATA TRANSCRIPTION FACTOR 3 273 - -
Cca07g00674 275 MobiDBLite consensus disorder prediction 70 119 - -
Cca07g00674 275 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 259 - -
Cca07g00674 275 MobiDBLite consensus disorder prediction 70 97 - -
Cca07g00674 275 Gene3D - 191 262 IPR013088 GO:0006355|GO:0008270
Cca07g00674 275 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
Cca07g00674 275 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355|GO:0043565
Cca07g00674 275 Pfam GATA zinc finger 201 235 IPR000679 GO:0006355|GO:0043565
Cca07g00674 275 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 273 - -
Cca07g00674 275 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00674 Cca-Chr7 9771823 9773749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00674 42 263 C2C2-Gata Transcription Factor Family AT4G32890 41.048 6.12e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca07g00674 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00674 - - gmx:100786479 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00674 07 9771823 9773749 Cca08g00987 08 23709043 23711059 PCT