Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00647 ATGGAAATTCAGTTCCAACAACCAAACCTGCAGCATCAGAAAGCAGGCATTGCAATCACCAAAGGAGGGAAGTTCAAAGGGAGAAGCAGAAACAACAACACCAACAAATTTGTTGGTGTGAGGCAAAGGCCTTCAGGGAGATGGGTGGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCTGAGGAAGCAGCCAGAGCCTATGATGAAGCTGCATGCCTTCTTCGCGGATCCAACACTCGCACCAACTTCATCACTCATGTCTCCTTGGATTCCCCTCTTGCTTCTCGAATCCGAAATCTGCTTAACAACAGAAAAGGTATTAAAAAAGAGGAGGATTCTAATGCTAATGCCCCAAGAGTTAGCACCATTAGCagtgctagtgctggtgctagtactagtgctagtaccaatactagtactaATTCAAGCAGTGACAATGACAATAACAACAATAACAAGTCTCTTTCTAATGTGGCAACTCAAAGTTCAAATCTGTTTGATGATGCTTATAAACCAGATTTGAGCAATTGCAGGGAGGAATATGAGTCTAGTCATCAATCCAATGCTTCATGGGGTTTTGGACCTGTCTTTGATCGTTTTCCTATTGCTCAAATATTGGATATTCCAAAGATTGATGATAGCTTCACTGATGCAGCTGACTTTGAGCTTTCAGAATTTGAAAGAATGAAAGTTGAAAGACAAATATCAGCTTCACTCTATGCAATTAATGGGGTGCAAGAGTACATGGAAACTGTTCAAGAATCCAATGAAACACTCTGGGATCTTCCACCCTTATGCTCGTTGTTCTGTTAA 840 0.3917 MEIQFQQPNLQHQKAGIAITKGGKFKGRSRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGIKKEEDSNANAPRVSTISSASAGASTSASTNTSTNSSSDNDNNNNNKSLSNVATQSSNLFDDAYKPDLSNCREEYESSHQSNASWGFGPVFDRFPIAQILDIPKIDDSFTDAADFELSEFERMKVERQISASLYAINGVQEYMETVQESNETLWDLPPLCSLFC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00647 279 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Cca07g00647 279 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cca07g00647 279 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Cca07g00647 279 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Cca07g00647 279 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Cca07g00647 279 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Cca07g00647 279 MobiDBLite consensus disorder prediction 125 165 - -
Cca07g00647 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 266 - -
Cca07g00647 279 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Cca07g00647 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 13 266 - -
Cca07g00647 279 MobiDBLite consensus disorder prediction 117 165 - -
Cca07g00647 279 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00647 Cca-Chr7 9417830 9419140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00647 10 279 AP2-EREBP Transcription Factor Family AT5G19790 40.143 5.10e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g00647 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00647 K09286 - gmx:100796898 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00647 07 9417830 9419140 Cca08g00966 08 23103433 23104419 PCT