Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00640 atgacgaacctctgcgggccttcatggagcgcttctccagcatctcgCTCCCCAACCACGGCACCCAACTCTTCATCTACGCCGCCACCCACCACCCCTCCTCCGCCGCCGCACACACTCTCGCAACCTCCCTCGCCCAAGCCCTCACCATTTACTACCCCTTcgccggccgcctccgccgcctccccggcggccgccACATCCTCCACTGCAACGCCCAGGGAGCCCTCCTCATCCAAGCCACGTGTCGCCGCCATCGACTACACTCTCCCCATCGCCCATGTCCCCCTCCTCGTCGCGCAGCTCACGCGCTTCCCCTGCGGCACCCTCACCCTCGCCATCGCCCTCTGCCGCGCCCTCCTCGACGGCGCCTCCGTCACTGGCTTCGTCAACACGTGGGCCAAACTCGCCAGAGGAGAGAATTTGGACTCCACCCTCTTTCCTCTCCACGATCGAAGCATCTTGGACTCGAGAAGACTCAATAAACCACCGCGTTTCCAACACCCCGAGTTTTTCCCACCACCCCTTTGGACTCAACAACTTGATCATCAGGTATCAAATTCTACGGTTGCAGAAGAAACCACACATCTCGCTAAAGATAATCATGATCGGTTAGATTTTTCGACAGAAATTAACGGACATGAAGTGCTTGGTACGGCCATTCTGAGACTCACGAAAGTTCAAGTTCAGAAACTGAAGGACAAAGCTTCAGACTTCGCAACTGGGTATGGTTCTCCAAGACCCTATACTAGTTTTGAGGTTATAAGTGGTCACTTGTGGAAGTGTGTTTGTAAGGTGCGTTATGTTGTCAATGGAAATGGAAGTCAACCCACAAGGTTGACCACGTTGGTGAATTGTAGAAACCGATTAAGCCCTTCTCTCCCTTGGTCATATTTCGGGAATGCAACGTTTCCCACGGTGACGCAAACTTGTTCCTTTGATGGGATCATGGGGAAGCCTCTTGGCTATGCTGTGGGGAGAGTGAGGGAAGCGGTGGAGAAGATGAATGATGAGTACGTGAGGTCTGCTCTTGATTATGTAGGGAGTTTGGAGGACATGGATTTGTTGAGGGACGTGTTTTATAACTCTGGTGGTGGAAAGGGGCGAGAGCCTAATTTGTATGTGGTTGGTTGGACGAATTTTGCGTATTTGGAGACGGATTTTGGGTGGGGGAAACCCCTTTGTTTGCTTCCGGGGAATATTAACTCTGATGGGAAGGCTTTCCTCTTGGACACTGCTACGGGTGATGGCTTTGTTGTTGCTGTTTGTTTGCAGGCTTCGCTTATAGATCATTTGAACAAGTTGTTTTATGAGGATATAGAGAATCCTGCATCCAAATTGTGA 1344 0.4799 MTNLCGPSWSASPASRSPTTAPNSSSTPPPTTPPPPPHTLSQPPSPKPSPFTTPSPAASAASPAAATSSTATPREPSSSKPRVAAIDYTLPIAHVPLLVAQLTRFPCGTLTLAIALCRALLDGASVTGFVNTWAKLARGENLDSTLFPLHDRSILDSRRLNKPPRFQHPEFFPPPLWTQQLDHQVSNSTVAEETTHLAKDNHDRLDFSTEINGHEVLGTAILRLTKVQVQKLKDKASDFATGYGSPRPYTSFEVISGHLWKCVCKVRYVVNGNGSQPTRLTTLVNCRNRLSPSLPWSYFGNATFPTVTQTCSFDGIMGKPLGYAVGRVREAVEKMNDEYVRSALDYVGSLEDMDLLRDVFYNSGGGKGREPNLYVVGWTNFAYLETDFGWGKPLCLLPGNINSDGKAFLLDTATGDGFVVAVCLQASLIDHLNKLFYEDIENPASKL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00640 447 Gene3D - 211 439 IPR023213 -
Cca07g00640 447 MobiDBLite consensus disorder prediction 23 53 - -
Cca07g00640 447 MobiDBLite consensus disorder prediction 1 80 - -
Cca07g00640 447 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 84 442 - -
Cca07g00640 447 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g00640 447 MobiDBLite consensus disorder prediction 54 77 - -
Cca07g00640 447 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 84 442 - -
Cca07g00640 447 Pfam Transferase family 90 433 - -
Cca07g00640 447 Gene3D - 55 173 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00640 Cca-Chr7 9314720 9317580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00640 83 438 Monolignol Biosynthesis Gene Families AT5G48930 33.148 2.55e-51 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00640 K13065 - gmx:100819383 468.774