Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00627 ATGGACAGGCTCATAAAGGTAGACCCAACAAACACGGTCCCAATAAGAATCGAAGCAGGGCAAAAGTGCCAGGGCAAAATCACCCTTCGCAACGTCATGTACACGATGCCCGTCGCGTTCCGCCTTCAGCCACTCATCAAGACGCGGTACACGGTGAAGCCCCACTCGGGAATCATATCGCCTCTAGCAACAATCAGCATCGAGATCGTCTACAGTCTCCCAGGCGGGTCCACTCTCCCCCACTCGTTCCCCCACTCGGAGGACTCGTTTCTCCTCCACAGCGTGGTGGTTCCCGGCGCCACCGTGAAAGAGCCCTCCTCCATGTTCGAGTCGGTCCCCAGCGAGTGGTTCACGGCCAAAAAGAAACAAGTGTTCATCGACAGCGGCATCAGAATCCTCTTCGTGGGGTCGCTCGTCCTGGCCCAGTTGGTCCAAGACGGGTCCATGGACGAAATCAGGGAAGTCCTGGAACACAGCGACCCCACGTGGAAGGCCGTTGACTCCGTTGACCCCAACGGTGACACGCTCCTCCACGTGGCAATCTCCCGAAGCAGACCCGATCTGGTTCAGTTACTCCTGGAATTCAACGCGGACGTAGAAGCAGCGAACCGTTCCGGTTTGAGTCCGCTAGAATCGGCGTGTTCCTCGGGGGAGGAATTAATCGTGGAGCTTCTACTAGCTCACAAGGCAACGACGGAGAGAAAGGAATCATCAGCGTTTGGAGCGATTCATCTGGCAGCGAGGGAAGGACACGTGGAGGTTTTGAGGCTGGTGTTGCTAAAAGGCGCGGACGTTGACTCGTTGAGCAGGGACGGAACGACGGCGTTACACGTGGCGGTGAAGCGAGGGGAGAGAGAGTGCGTGAGGTTGTTGTTGGCGAACAATGCGAGGTTGGATATTCGCGACTCGCGAGATGGCGACACGTGTGTCCACGTGGCAGCGGGGATGGGGGACGAGAGCATGGTGAAGTTGCTGTTGAAGAAGGGGGCGAACAAGGACGTGAGGAATTACCTAGGGAAGACGGCGTATGACGTGGCGGTGGAGAATGGGGCGACGCGCGTGCTGGACGCGCTGCGGCTGGGGGACGGGCTGTGCGTGGCGGCGAGGAAGGGGGAGGTGAGGAGCATGGAGAGGGTGATCGAGAGTGGGGCGGCGGTGAACGGGAGGGACCAGCACGGGTGGACGGCGTTGCACAGGGCGTGTTTCAAGGGGCGCGTGGAGGCGGTGAGGGCGCTGCTGGAGAAGGGGATAGAGTTGGAGGCGCGGGATGAGGAGGGGTACAGCGCCCTGCACTGCGCGGTGGAGGCGGGGCATGCTGACGTGGCGGAGGTTTTGGTGAAGCGAGGGGTGGACGTGGAGGCCAGGACGAGCAAGGGCGTTACGGCGTTGCAGATCGCTGAGGCCTTGGGCTATGTTGGGTTTGCCAGGGTGCTTGGAGTTCGACACGTGGCGGAGCCTCACTGGAGGAACAAGGTTGGCAGGAGGAGACAGATTCCGGGTAGCTTTCACCCTTCTATGCCTTTGCCTCTTCTGCTCTAG 1539 0.601 MDRLIKVDPTNTVPIRIEAGQKCQGKITLRNVMYTMPVAFRLQPLIKTRYTVKPHSGIISPLATISIEIVYSLPGGSTLPHSFPHSEDSFLLHSVVVPGATVKEPSSMFESVPSEWFTAKKKQVFIDSGIRILFVGSLVLAQLVQDGSMDEIREVLEHSDPTWKAVDSVDPNGDTLLHVAISRSRPDLVQLLLEFNADVEAANRSGLSPLESACSSGEELIVELLLAHKATTERKESSAFGAIHLAAREGHVEVLRLVLLKGADVDSLSRDGTTALHVAVKRGERECVRLLLANNARLDIRDSRDGDTCVHVAAGMGDESMVKLLLKKGANKDVRNYLGKTAYDVAVENGATRVLDALRLGDGLCVAARKGEVRSMERVIESGAAVNGRDQHGWTALHRACFKGRVEAVRALLEKGIELEARDEEGYSALHCAVEAGHADVAEVLVKRGVDVEARTSKGVTALQIAEALGYVGFARVLGVRHVAEPHWRNKVGRRRQIPGSFHPSMPLPLLL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00627 512 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Cca07g00627 512 Gene3D - 360 496 IPR036770 -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Cca07g00627 512 ProSiteProfiles Ankyrin repeat region circular profile. 425 455 - -
Cca07g00627 512 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Cca07g00627 512 Gene3D - 237 359 IPR036770 -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Cca07g00627 512 Gene3D Immunoglobulins 1 125 IPR013783 -
Cca07g00627 512 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED 1 481 - -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Cca07g00627 512 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Cca07g00627 512 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 1 481 - -
Cca07g00627 512 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Cca07g00627 512 Pfam Ankyrin repeats (3 copies) 151 231 IPR002110 GO:0005515
Cca07g00627 512 Pfam Ankyrin repeats (3 copies) 364 455 IPR002110 GO:0005515
Cca07g00627 512 Gene3D - 131 236 IPR036770 -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Cca07g00627 512 PRINTS Ankyrin repeat signature 272 287 IPR002110 GO:0005515
Cca07g00627 512 PRINTS Ankyrin repeat signature 321 335 IPR002110 GO:0005515
Cca07g00627 512 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Cca07g00627 512 SUPERFAMILY Ankyrin repeat 166 490 IPR036770 -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 338 367 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 205 234 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 271 300 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 238 267 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 392 421 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 425 454 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 305 334 IPR002110 GO:0005515
Cca07g00627 512 SMART ANK_2a 172 201 IPR002110 GO:0005515
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Cca07g00627 512 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Cca07g00627 512 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Cca07g00627 512 SUPERFAMILY PapD-like 2 150 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00627 Cca-Chr7 9042077 9043615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00627 204 478 Miscellaneous Gene Families AT1G05640 31.488 3.89e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00627 - - gmx:100782232 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00627 07 9042077 9043615 Cca08g01093 08 28944158 28946177 PCT