Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00617 ATGGTTGATCAGCAAAAAATGAGTGGTGGTGATGGCACTTCTAGTGTTACTAAATGTAAGGCCAAACATGCCATGTTAGAAGTATCTTCACCTCCATGTGGAGCGTGTAAATACCAAAGGAAAAAGTGCACTAATGATTGCATGTTTGCACCTTACTTTGGTTCTGACCATGGTTTGGCACAATTTACCATAGTGCACAAAATTTTTGGTGCAAGCAATGTATTGAAGATGTTGTTGGATGTTGAAGTGAATCGTCGTCAAGAAGCGATGCGTAGCATATTATTTGAGGCTCAGGCAAGACTAATTGATCCTGTTAATGGATGTCTCTCCACCATGATTGGTTTACAACAACAGGTGGCATCATTGCAAGGGGAGCTAGCTATGGTGAAAAATCAGCTAATAAATACCAAGATTTTATATGAAGAACTTTTCAACAGTACATATcaacaacaacaacaattgcaaccaaacatcaaTGTAGCTGGGCAACCATACTCCAACAACTCACCTGCTTCCACCAATTTCATGAACATGAATGGCTTCAACTCTAATTTTGATCACCTTGGAATGCAGACAACACCCTTAACAGACAACTTAAAGCCTCTTCAATTCTCTGAGTTGCCCCAAAATGAGGAAGAAAACATGATTCTCCAAGTTTCCAACAATGACATGACTCATCTCCTTCCTTGA 690 0.3797 MVDQQKMSGGDGTSSVTKCKAKHAMLEVSSPPCGACKYQRKKCTNDCMFAPYFGSDHGLAQFTIVHKIFGASNVLKMLLDVEVNRRQEAMRSILFEAQARLIDPVNGCLSTMIGLQQQVASLQGELAMVKNQLINTKILYEELFNSTYQQQQQLQPNINVAGQPYSNNSPASTNFMNMNGFNSNFDHLGMQTTPLTDNLKPLQFSELPQNEEENMILQVSNNDMTHLLP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00617 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 214 - -
Cca07g00617 229 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
Cca07g00617 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 17 214 - -
Cca07g00617 229 Coils Coil 112 132 - -
Cca07g00617 229 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00617 Cca-Chr7 8863931 8866289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00617 32 202 AS2 family AT3G03760 48.876 1.49e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca07g00617 LOB 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00617 - - pvu:PHAVU_001G115200g 225.328