Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00610 ATGGAGATGCAGAAAAGAACCGTGGCGAGATGGAACGGAATAGAGTCTACTCATACGAGTTCACGATCCGTGACAGAAACGGTGAACGGGTCACATGATTTCTTAATAAAGGGCTTCTCGTTGACGAAAGGAATGGGCGTAGGGGTGCCCTTAAAGAGTGAGAGTTTCAGCGTGGGAGGGTACGAGTGGGGCATATACTTTTACCCTGATGGCTCCAAGTTAGAGGACAACAAATATGTCTCCATCTTTGTAGCGCTCCTTTCGGACGCCACCAACGTTCGTGCCCTCTTTGAACTCGCCATGCTCGACCAGAGTGGTGAAGATGACCACAAGATCAACAGCCACTTCGACCGCACCCCCGACGCTGGCCCTCACACCCTCAAATTCAAGGGCAGCATGTGGGGGTTTCGGCGGTATTTCAAACGGAGAGTGCTGGAGACGTCGAGGTTTCTGAAGGATGACTGTTTGAAAATACACTGCGTGGTTGGGGTTTTGGTGTCATCGTCGATGGATTGTTCTAACTTGAACCCAATAGAAGTTCCTGAGTCTGATATGGGGGCACATTTTGGGATGCTGCTTGACGATGAGGAGCTATCGGATGTTACTTTCGTAGTTGATGGAGAAAAGTTTTATGCACATAAGCTTATTCTGACTACACGCTCAACAACGTTTGAAACTCGGTTTCTTGAAGGGAAAGGGTTAGATAAAAGTGAAATAGTTATTACAGACGTGGAACCTAGGGTTTTCAAGACTATGCTTCAATTTATTTATATTGACAATTTTTTACCGGATGAAGAGCTCCTTAGGCATTGTTCGGCATCTTTGGAGTCTGTATTTGAATCATTTGTTTCGAAGTTGTTAATTGCTGCAGAAAAGTATGGTTTGCCAAGACTCAAGAGTCTTTGCGAATATTTGTTGTGTCAAGACATATGTGTAGAGACTGTTGCCTATCTACTTGCTTTTGCTGATTGTCATGATGCTATAGTGTTGAAGTCCAAATGTCTTGAGTTTTCTGCTGATTACCTTGATGATGTGTTGCAATCTGAAGGTTGCAAGTATCTTAAGAAAAATTGTCCATTGCTGCTATCAGAACTGGAAATGATGGAATGCGTGCAGAATGTGGCTGAATGCAAGGGCAAATTAACAAATGATGTGCCGGTAGGTGAAGAAGAAGCTAGGGTAGAAGAACAAAATCAAAATGTCTCACTTATTATTGTTGACGACAACAATTAG 1233 0.4371 MEMQKRTVARWNGIESTHTSSRSVTETVNGSHDFLIKGFSLTKGMGVGVPLKSESFSVGGYEWGIYFYPDGSKLEDNKYVSIFVALLSDATNVRALFELAMLDQSGEDDHKINSHFDRTPDAGPHTLKFKGSMWGFRRYFKRRVLETSRFLKDDCLKIHCVVGVLVSSSMDCSNLNPIEVPESDMGAHFGMLLDDEELSDVTFVVDGEKFYAHKLILTTRSTTFETRFLEGKGLDKSEIVITDVEPRVFKTMLQFIYIDNFLPDEELLRHCSASLESVFESFVSKLLIAAEKYGLPRLKSLCEYLLCQDICVETVAYLLAFADCHDAIVLKSKCLEFSADYLDDVLQSEGCKYLKKNCPLLLSELEMMECVQNVAECKGKLTNDVPVGEEEARVEEQNQNVSLIIVDDNN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00610 410 ProSiteProfiles MATH/TRAF domain profile. 29 162 IPR002083 GO:0005515
Cca07g00610 410 SUPERFAMILY POZ domain 178 309 IPR011333 -
Cca07g00610 410 Gene3D Potassium Channel Kv1.1; Chain A 176 309 IPR011333 -
Cca07g00610 410 SUPERFAMILY TRAF domain-like 26 165 - -
Cca07g00610 410 SMART math_3 34 145 IPR002083 GO:0005515
Cca07g00610 410 ProSiteProfiles BTB domain profile. 199 265 IPR000210 GO:0005515
Cca07g00610 410 Pfam BTB/POZ domain 191 309 IPR000210 GO:0005515
Cca07g00610 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 374 IPR045005 GO:0016567
Cca07g00610 410 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 13 374 - -
Cca07g00610 410 SMART BTB_4 199 310 IPR000210 GO:0005515
Cca07g00610 410 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 28 165 IPR008974 GO:0005515
Cca07g00610 410 Gene3D - 310 380 - -
Cca07g00610 410 CDD MATH 30 162 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00610 Cca-Chr7 8783864 8786147 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca07g00610 BTB 1.1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00610 K10523 - gmx:100818306 459.144