Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00609 ATGGAGAGTGAGTCGTGGTCAGTGACGAAAACCCTGAACGGTTCTCACCTGTTCGTGGTCGAAGGTTACACTCTGTTGAAGGGAATCGGCGTTGGAAAACACGTCAAGAGTGAGAAGTTTGACGCGGGAGGACACAGGTGGATCATATACTTGTACCCTGATGGCAAGTACCCCGAAGATAACACCGTTTTCATTTCTGTTTACCTTGCACTCGTTTCCTTAGCCACCAATGTTCGTGCCATCTTTGAATTCACCTTGCTCGACCAGAGCGACAAAGGGGAGCACATGGTCAATGACTACTTCACCACCAACCTCATCGATGGACCCCAAATTTTCCACTTTGGCTCCTTCTGGGGGATCAGGCATTTTATCGCAAAGGATAAACTGGAGAAGTCGACATTCCTCAAGGATGACTGCTTGAAGATAAACTGCGTTGTTGGGGTTCCGGTAACGAGCGTAGAAGTTCCCAAGCCCCTGGTGAATATTCCTAAGTCTGATATTGGATCATATTTTGGGAAGCTGTTAGAGAATGAGAAGGGATCAGATGTTACTTTCTTGGTTGGTGGAGAAAGGTTTCGTGCTCATAAGCTTGTTTTGACTACTAGGTCAACGGCATTCAAGACTATGTTTCTCACTGGAAAGCAGGAGGAGGGTCCTAATAGTGACAAATGCATTGTAGTTGATGGCATGGAACCTAAGGTTTTCAAGGCTTTGATTCATTTTATTTATACAGACACTCTTGAAGAAGATGAAGAGCTCTTAATGTCATGCTCAGAATTTTTACCTTCGTTATCTGAATCATTTCCTGGGAAGTTGCTAGTTGCTGCACAAAAGTATGGTTTTCCAAGACTTGAGTTGATGTGCCAATCTGCAATTGCCAAAGAAATATCTATAGATTCTGTTGGTTATATTATGGATTTTGCTGATCGTAATCAAGCTGAAGAATTGAAGTCCCTGTGTCTAAAATTTTCTACTAATAACGTTGTTGCTGTGGTGCAATCAGAAGGTTTTGAGTATCTTAAGAAAAATTGCCCCTGGTTGGAAACTGAACTGCAAAAGATTGTGACAGGATACAAAAGTGGAGAGAATTCGTGTGAAGAAGGAAGTCAAAGTAGTGTATGTGGCCAACTTTATGGTGGTAATATCAGCAAAACTAAGAGGATTAACAAGAAGAAAAATAGAAAGAGATCTCGAAAGACTATTGAAGACATTGCAGATATTTAG 1224 0.4183 MESESWSVTKTLNGSHLFVVEGYTLLKGIGVGKHVKSEKFDAGGHRWIIYLYPDGKYPEDNTVFISVYLALVSLATNVRAIFEFTLLDQSDKGEHMVNDYFTTNLIDGPQIFHFGSFWGIRHFIAKDKLEKSTFLKDDCLKINCVVGVPVTSVEVPKPLVNIPKSDIGSYFGKLLENEKGSDVTFLVGGERFRAHKLVLTTRSTAFKTMFLTGKQEEGPNSDKCIVVDGMEPKVFKALIHFIYTDTLEEDEELLMSCSEFLPSLSESFPGKLLVAAQKYGFPRLELMCQSAIAKEISIDSVGYIMDFADRNQAEELKSLCLKFSTNNVVAVVQSEGFEYLKKNCPWLETELQKIVTGYKSGENSCEEGSQSSVCGQLYGGNISKTKRINKKKNRKRSRKTIEDIADI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00609 407 SUPERFAMILY TRAF domain-like 11 150 - -
Cca07g00609 407 CDD MATH 14 146 IPR002083 GO:0005515
Cca07g00609 407 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 4 368 IPR045005 GO:0016567
Cca07g00609 407 Pfam BTB/POZ domain 172 293 IPR000210 GO:0005515
Cca07g00609 407 SMART BTB_4 181 296 IPR000210 GO:0005515
Cca07g00609 407 Gene3D - 295 367 - -
Cca07g00609 407 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 12 149 IPR008974 GO:0005515
Cca07g00609 407 ProSiteProfiles BTB domain profile. 181 251 IPR000210 GO:0005515
Cca07g00609 407 Gene3D Potassium Channel Kv1.1; Chain A 157 290 IPR011333 -
Cca07g00609 407 SUPERFAMILY POZ domain 158 294 IPR011333 -
Cca07g00609 407 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED 4 368 - -
Cca07g00609 407 ProSiteProfiles MATH/TRAF domain profile. 13 146 IPR002083 GO:0005515
Cca07g00609 407 CDD BTB_POZ_BPM_plant 167 292 - -
Cca07g00609 407 MobiDBLite consensus disorder prediction 388 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00609 Cca-Chr7 8770042 8772347 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca07g00609 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00609 K10523 - gmx:100809683 434.491