Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00608 ATGTACAACCCCGCGGCGGCGAGCAGGAGCGTCCTGGCGTCGCGCACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGCTCCCACAAGTTCGTGATCAAGGGCTACTCTCTGGCGAAGGGAATCGGCGTCGGAAAGCACATCGCCAGCGAGACTTTCACCGTCGGAGGCTACCAGTGGGCCATCTACTTCTACCCCGACGGCAAGAACCCCGAGGACAACTCCGCCTATGTCTCCGTCTTCATCGCGCTCGCTTCCGAGGGCACCGACGTTCGCGCGCTCTTCGAACTCACGCTGCTCGACCAGAGCGGCAACGGCAAGCACAAGGTCCATAGCCACTTCGATCGCTCGCTCGAGAGCGGCCCCTACACTCTCAAATACCGCGGCAGCATGTGGGGGTATAAGCGGTTTTTCAAACGGGCTCAACTCGAGGCGTCGACTTTCCTCAAGGATGATTGCTTGAAGATAAACTGCACTGTTGGTGTGGTGGTGTCGTCCATTGATTGTTCTAAGTTAAACACGATAGAAGTTCCTGAGTCTGATATTGGGGCGCATTTCGGGATGCTGTTAGAGAATGAGGAGGGGTCGGATGTTACTTTCTCTGTAGGTGGAGAAAGGTTTCATGCGCATAAGCTTGTTTTGGCTGCCCGGTCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAAGATGATCGTGACATAGTTGTTACTGATATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACTCTCTTATTGATGATGAAGAGCTCTTTACGTCACGATCGTCTTCGTCATTCTTGCCTTTGGTGTCTGAATCATTTGCAGCGAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAACTGATGTGCGAGTCTGTACTTTGCAAAGACATATCTATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCAAGCTACAGAATTGAAGTCTGTCTGTCTGCAATTTTCTGCTGAAAACCTTGTTGCTGTGATGCAATCTGATGGATTCGAGTATCTCAAGGAAAATTGTCCATTGCTGCAATCAGAATTGCTAAAGACTGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAGTGTAGAAGTGTGTGGGCCCAGTTTTCTGATGGTGGTGACACCAATGATAGGAGTGAGTCCAGGGCAAGAAGCTTGAGAAGGGATTCCGTTGGGACAAGGAAACGGTCATTGGTACAAGACCAGCCTGCAGGGATTCCATTGCAAGCCGCATTTTTTCTTTTTCTTTTCGGGGGGAACTGCACAAGCAAAAGGGTCGTTTTTTCTGGGTACAAAATTTGGTGGGGATCATCAAAGATTGCTCTTTTCGGCAAAAGAAATTTGACCCCAAATTTTGGAGGAGGAGGAAGAGGGTTGCGGGGTTTTGGAAGCTTAATTAGGAGGAAGCAAGTTGATTCTGTTCATAACAGGAGACATGCTCAACTGGCTAGGAAGTTATCTGCTGTTGACCTCGTTGGAATTGGGGTTGGAGCTACCATAGGAGCTGGAGTGTATATTCTCATTGGAACAGTTGCTAGAGAGCAAGCAGGACCAGCACTTGTGCTATCACTTCTCTTTGCAGGAATAGCTGCTGGACTGTCAGCTTTTTGTTATGCAGAGCTTGCTTGTCGGTGCCCGTCTGCGGGGAGTGCTTATCATTATACGTACATATGCATTGGAGAAGGggttgcttggttggttggttggtCTCTGATTCTAGAATATACAATTGGGGCATCGGCTGTTGCTCGTGGCATAACCCCAAATCTGGCCTTGTTTTTTGGTGGAGAGAACAACCTACCTTCATTTTTGGCTCGACATACCTTACCAGCTCTTGGTATTGTAGTTGATCCATGTGCAGCAGCATTAATTCTTCTTGTTACCCTACTCCTGTGCCTTGGAATCAAGGAGAGTTCAATGGCACAATCCATTGTGACCACAGTAAATGTCTGTGTCATGCTTTTCATCATTTTAGCTGGTGGATATCTAGGCTTCAAGTCTGGATGGGTTGGATATGAACTCTCCAATGGGTATTTTCCTTATGGAATGAATGGGATATTTGCTGGGTCTGCAATAGTTTTCTTTTCATACATTGGTTTTGATTCAGTGAGCAGCACAGCTGAGGAGGTCAAAAATCCTCAACGAGACTTGCCAATTGGCATATCAACTGCATTAACTATATGTTGCATTCTGTATATGCTTGTAGCAGCAGTTATTGTTGGCTTAGTACCATATTATGAGTTGAACCCTGATACCCCAATCTCCTCAGCATTTTCTAGCTATGGGATGGAATGGGCAGTGTATATAATAACAACTGGAGCTGTCACTGCTCTTTTTGCAAGTTTGTTGGGTTCAGTTCTTCCTCAGCCACGTGTCTTTATGGCAATGGCTAGGGATGGTTTATTGCCCCCTTTCTTCTCAGACATTCACAAAGGCACACAGATCCCCTTGAAAAGTACCATTGTCACTGGTGTCTTTGCAGCCACTCTCGCATTCTTTATGGATGTTTCCCAATTAGCAGGGATGGTTAGTGTGGGAACATTGCTTGCATTCACCACCGTTGCAGTTTCAGTTTTGATAATCAGATATGTTCCACCTGATGAGGTACCCATTCCGTCGTCACTTCTAACATCTGTTGGTCCATTGTTGACGCATTCTGGTGGTGATATTGGAGAAGATAGGGCCATAAGTCCTGTAGAGCAACTACATGACAAGTCAGAGGCTTTGCTTGGGCATCCGTTAATCATAAAAGAACAGACCAAAGGTAATTATTCTTTGAATCTTCTTCCCTTTTTATGGAGTGAATTTTGGAGAAAATTTAGAGTGTAG 2886 0.4584 MYNPAAASRSVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIEVPESDIGAHFGMLLENEEGSDVTFSVGGERFHAHKLVLAARSTAFETEFFNGMEEDDRDIVVTDMEPKVFKALLHFIYRDSLIDDEELFTSRSSSSFLPLVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYQATELKSVCLQFSAENLVAVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSESRARSLRRDSVGTRKRSLVQDQPAGIPLQAAFFLFLFGGNCTSKRVVFSGYKIWWGSSKIALFGKRNLTPNFGGGGRGLRGFGSLIRRKQVDSVHNRRHAQLARKLSAVDLVGIGVGATIGAGVYILIGTVAREQAGPALVLSLLFAGIAAGLSAFCYAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITPNLALFFGGENNLPSFLARHTLPALGIVVDPCAAALILLVTLLLCLGIKESSMAQSIVTTVNVCVMLFIILAGGYLGFKSGWVGYELSNGYFPYGMNGIFAGSAIVFFSYIGFDSVSSTAEEVKNPQRDLPIGISTALTICCILYMLVAAVIVGLVPYYELNPDTPISSAFSSYGMEWAVYIITTGAVTALFASLLGSVLPQPRVFMAMARDGLLPPFFSDIHKGTQIPLKSTIVTGVFAATLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEVPIPSSLLTSVGPLLTHSGGDIGEDRAISPVEQLHDKSEALLGHPLIIKEQTKGNYSLNLLPFLWSEFWRKFRV 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00608 961 Gene3D Amino acid/polyamine transporter I 501 903 - -
Cca07g00608 961 SMART BTB_4 196 309 IPR000210 GO:0005515
Cca07g00608 961 PANTHER CATIONIC AMINO ACID TRANSPORTER 4, VACUOLAR 478 942 - -
Cca07g00608 961 SUPERFAMILY TRAF domain-like 23 162 - -
Cca07g00608 961 CDD MATH 27 160 IPR002083 GO:0005515
Cca07g00608 961 ProSiteProfiles BTB domain profile. 196 262 IPR000210 GO:0005515
Cca07g00608 961 SMART math_3 31 143 IPR002083 GO:0005515
Cca07g00608 961 Gene3D - 308 382 - -
Cca07g00608 961 Gene3D Potassium Channel Kv1.1; Chain A 172 303 IPR011333 -
Cca07g00608 961 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 25 164 IPR008974 GO:0005515
Cca07g00608 961 Pfam Amino acid permease 505 887 IPR002293 GO:0016020|GO:0022857|GO:0055085
Cca07g00608 961 CDD BTB_POZ_BPM_plant 182 306 - -
Cca07g00608 961 Pfam BTB/POZ domain 188 307 IPR000210 GO:0005515
Cca07g00608 961 SUPERFAMILY POZ domain 175 307 IPR011333 -
Cca07g00608 961 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 478 942 - -
Cca07g00608 961 CDD BACK_AtBPM-like 306 367 IPR034090 -
Cca07g00608 961 ProSiteProfiles MATH/TRAF domain profile. 26 160 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00608 Cca-Chr7 8746390 8760090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00608 483 942 Organic Solute Cotransporters AT3G03720 68.240 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca07g00608 AA_permease_2 2.4e-51 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00608 K13863 - hbr:110638420 1146.34