Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00581 ATGGAAGATCATCAGGGGCAGCATGAGGCAAGGCAAGGCCCCGAGAAGAGTGAAGCGGTTCGGTCAAGGTGGACTCCCAAACCGGAACAAATCCTCATCCTCGAATCCATCTTCAACAGTGGCATGGTTAACCCTCCAAAGGACGAAACCGTCAGAATAAGAAAGCTTCTTGAGAAATTTGGCACCGTTGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCTCGCCGCCGCCAGCGACAGATGATGCAGCAAGCTGCTGCTGCTGTCACCACCGTCGTCGACCAGCCTCAGCCTGAGCCTCAGCTCCATgctcaggctcaggctcaggctcaggctcaggctcaggctcaggctcaggctcaggctcaggctgaggctgaggctcTGATCGGTGGTGCAATTCCACATGATCACACTCAGACTCAGCTCAACCTTGTTGCAACTCAAAGTGCTAGTTCAACCTTGGGGTTTGGTTCTTCTCCTTCTTATGATCTCCTTGGTTCCTCTTCTTCACAAGGCATCGAGGGTTTCTTTTCAGTTTCTTCTCCTCATATGCCTTTCCCTGACATAATTGACCACACTTCACCTGCTTCATCACTCTTGTACCCTCCTCTTGATCCAAATTTGAGCTACCAGCCTGGATACGGGAGCACTAATATTTCAGGATTCATCACAGTGTTCATCAATGGGATTGCAACTGAACTTCCAAAGGGACCAATAGACTTCAAATCAGTGTTTGGAAATGATGTAATGTTAGTTCATTCCTCTGGAATTCCAGTTCCCATAAATGAATTTGGGTTCTTGATGCAGTCACTGCAGCATGGCGAAAGCTACTTTCTGGTATCAAAGCAAACACAAGTATGA 879 0.4357 MEDHQGQHEARQGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQMMQQAAAAVTTVVDQPQPEPQLHAQAQAQAQAQAQAQAQAQAQAEAEALIGGAIPHDHTQTQLNLVATQSASSTLGFGSSPSYDLLGSSSSQGIEGFFSVSSPHMPFPDIIDHTSPASSLLYPPLDPNLSYQPGYGSTNISGFITVFINGIATELPKGPIDFKSVFGNDVMLVHSSGIPVPINEFGFLMQSLQHGESYFLVSKQTQV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00581 292 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Cca07g00581 292 ProSiteProfiles 'Homeobox' domain profile. 17 82 IPR001356 GO:0003677
Cca07g00581 292 Pfam Homeodomain 21 81 IPR001356 GO:0003677
Cca07g00581 292 Gene3D - 21 88 - -
Cca07g00581 292 MobiDBLite consensus disorder prediction 1 25 - -
Cca07g00581 292 PANTHER WUSCHEL-RELATED HOMEOBOX 11 5 101 IPR044558 GO:0003700|GO:0048830
Cca07g00581 292 PANTHER WUSCHEL-RELATED HOMEOBOX 11 110 289 IPR044558 GO:0003700|GO:0048830
Cca07g00581 292 PANTHER WUSCHEL-RELATED HOMEOBOX 11 5 101 - -
Cca07g00581 292 PANTHER WUSCHEL-RELATED HOMEOBOX 11 110 289 - -
Cca07g00581 292 SMART HOX_1 19 86 IPR001356 GO:0003677
Cca07g00581 292 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00581 Cca-Chr7 8363518 8366011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00581 17 290 Wox Gene Family AT5G17810 44.631 1.06e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca07g00581 Homeodomain 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00581 - - gmx:100791266 343.199