Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00580 ATGGCTTCGCATCACTTCAGCAATGTTGGTGAAGTTTTCAGTGGGAACATGGGTTTCTTCCCTTCCTCTCTTTTTGTGGGTTCCTCCCAAGGTCATCCTTTGTCTATGGGGCCAAAGGCTGAGATGGGTCTTCAGATTTTGAGCCCCTCAGTGTTTCAACATCCCCAGGAGAGCATGGGGACAAGGAGAGTGATCAGTGATGAGGGTGTTGAGAACAAGAACTTGTGTTTGAAGCTTGGAGAGGAAGTGGAAGAAGTTAAGGGCTCTGCCTCAGGGAAAAATGGCTACACCAAGCTTTGTGCTAGAGGACACTGGAGGCCTGCTGAGGATGAAAAACTTAAGGACCTTGTTGCTCAATATGGCCCTCAAAATTGGAACTTGATTGCTGAGCATCTAGAAGGAAGATCAGGGAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGGATCAACAGAAGGTCTTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGGCTGCTCATAAAATGTATGGCAACAAATGGGCCATGATTGCTAGACTCTTTCCTGGAAGGACAGATAATGCTGTGAAGAATCATTGGCATGTGATCATGGCCAGGAGGCAGAGGGAGCAGTCTAGTAATGTGTACAGAAGGAGAAAACCCACTATTAGTGAAGCCCTTCCAAAGGGTAATTTGAATTTGACTCTCTCTAACAATGCAGCCAGTGAGTCAACCATCTCAAGTACCATTGATGAATCTGCCTCAACTTGCACTAACCCCTCCCTCACTCCCTCTTCAGCCAAACTAACTCCTTTTGGCCTCTTTGATCAACTGGGACCAGCTCAGAATCACCAACCCTTTGGATCATTAATGGGACAATCTAGAGAAGGTGGGGATGTGAGTTTTAACAAATTTTTTGGTGCTTGGAAAGGTGAAGCTGTGGGAAAGGTGATGGGTGTGGACCAGTCCAATTTTTCAGATGCAAACTCAGAAGTATCAGTATCTGAGTCAGTTGCGACCTATAGGTCCAATCTTTCAATTTCTGAGGAGAGTGAAACTGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGGGCTACTTAG 1101 0.4532 MASHHFSNVGEVFSGNMGFFPSSLFVGSSQGHPLSMGPKAEMGLQILSPSVFQHPQESMGTRRVISDEGVENKNLCLKLGEEVEEVKGSASGKNGYTKLCARGHWRPAEDEKLKDLVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLLAAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREQSSNVYRRRKPTISEALPKGNLNLTLSNNAASESTISSTIDESASTCTNPSLTPSSAKLTPFGLFDQLGPAQNHQPFGSLMGQSREGGDVSFNKFFGAWKGEAVGKVMGVDQSNFSDANSEVSVSESVATYRSNLSISEESETVGDKINMPFIDFLGVGAT 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00580 366 Gene3D - 102 153 - -
Cca07g00580 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 203 IPR017930 -
Cca07g00580 366 Pfam Myb-like DNA-binding domain 105 165 - -
Cca07g00580 366 CDD SANT 105 146 IPR001005 -
Cca07g00580 366 ProSiteProfiles Myb-like domain profile. 149 199 IPR001005 -
Cca07g00580 366 Gene3D - 156 215 - -
Cca07g00580 366 PANTHER MYB PROTEIN-RELATED 56 366 - -
Cca07g00580 366 SMART sant 101 150 IPR001005 -
Cca07g00580 366 SMART sant 153 201 IPR001005 -
Cca07g00580 366 SUPERFAMILY Homeodomain-like 102 195 IPR009057 -
Cca07g00580 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 148 IPR017930 -
Cca07g00580 366 CDD SANT 165 196 IPR001005 -
Cca07g00580 366 ProSiteProfiles Myb-like domain profile. 102 148 IPR001005 -
Cca07g00580 366 PANTHER OS08G0435700 PROTEIN 56 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00580 Cca-Chr7 8348308 8351243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00580 101 366 MYB Transcription Factor Family AT1G69560 47.407 1.83e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g00580 Myb_DNA-bind_6 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00580 K09422 - gmx:100791795 497.278