Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00543 ATGGCGTCCCATATTACCCGTGAGTGGTCAGGAATCAATACATTCGCACCTGCTACGCAGACTAAGTTGCTTGAACTCTTGGGAAAACTTAAGCAGGAGAATGTGAACTCCTTGACTATTCTTGTGATGGGAAAAGGGGGTGTTGGAAAATCTTCGACTGTGAACTCCATCATTGGGGAAAGAGTGGTTTCGATTAGTCCTTTCCAGTCGGAAGGGCCGAGACCTGTGATGGTGTCACGATCAAGGGCTGGTTTTACATTGAACATTATTGACACTCCTGGTCTCATTGAAGGGGGATACATCAATGATATGGCACTTGATATAATAAAACGTTTCCTTCTGAACAAGACCATAGATGTGCTGCTTTATGTGGATCGCTTGGATGTGTATAGAGTGGACAACTTGGACAAGTTGGTTGCCAAAGCTATAACAGATAGTTTTGGCAAAGAAATATGGAACAAGGCTATAGTAGCACTCACACATGCCCAGTTCTCTCCACCAGATGGATTACCTTATGATGAATTCTTCTCTCAAAGATCTGAGTCTCTCTTGACGGTTCTTAGGTCTGGTGCCCGAATAAAGAAAGAAGCCATTCAGGCTTCTTCTATTCCTGTTGTTTTGGTCGAAAACAGTGGGAGATGCAACAAAAATGAAAGTGATGAAAAGGTTCTTCCGAATGGGACTGCTTGGATTCCTAACCTAGTCCAAACAATCACAAATACCGCATTGAACAAAAGTGCGTCTATTCATGTTGACAAGGATTTAATTGAAGGGCCAAATCCGAATCAGAGAGGAAAATTATGGATTCCTGTGGTGTTTGCTCTCCAATATTTCCTTCTCATCAAGCCAATAAAAGGACTGATTGAGAGGGACATTGAAAATGAGAGAAAGCCAGCATGGGAGAGACGTGATGCCGTGACTATAACTATGTATCATGCGAAGAAGTTTTCGCCGGGTAGCATGGTGCCTCATAAATCTCAAGGTGGTGCTGAACAGCTTGCAAATGTTGGGGTTTTGGGTGGATCTGCAGTGAAAAATGCCGCACCTGCTGGGGGAAGTGGGAAACAACGGTTAAGGTGGACATCTGATCTTCATGACCGTTTTGTGGATGCCATTACGCAACTTGGTGGACCAGATAGAGCAACACCAAAAGGTGTTCTTAGGGTGATGGGTGTTCCTGGATTGACTATTTATCATGTTAAAAGCCATTTACAGAAATATCGCCTTGCAAAGTACTTGCCTGAATCACCAGCTGATGGTAAAGACTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCCTTTCTGGTGCAGATTCCTCCCCGTGGGTATCTTAA 1335 0.4367 MASHITREWSGINTFAPATQTKLLELLGKLKQENVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALDIIKRFLLNKTIDVLLYVDRLDVYRVDNLDKLVAKAITDSFGKEIWNKAIVALTHAQFSPPDGLPYDEFFSQRSESLLTVLRSGARIKKEAIQASSIPVVLVENSGRCNKNESDEKVLPNGTAWIPNLVQTITNTALNKSASIHVDKDLIEGPNPNQRGKLWIPVVFALQYFLLIKPIKGLIERDIENERKPAWERRDAVTITMYHAKKFSPGSMVPHKSQGGAEQLANVGVLGGSAVKNAAPAGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGKDSKDEKRNSGDSLSGADSSPWVS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00543 444 Gene3D - 2 268 IPR027417 -
Cca07g00543 444 CDD Toc34_like 7 252 - -
Cca07g00543 444 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 256 IPR027417 -
Cca07g00543 444 MobiDBLite consensus disorder prediction 415 432 - -
Cca07g00543 444 Pfam Myb-like DNA-binding domain 358 408 IPR001005 -
Cca07g00543 444 PANTHER TRANSLOCASE OF CHLOROPLAST 1 300 - -
Cca07g00543 444 Gene3D - 354 413 - -
Cca07g00543 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 352 412 IPR017930 -
Cca07g00543 444 Pfam AIG1 family 38 228 IPR006703 GO:0005525
Cca07g00543 444 TIGRFAM 3a0901s02IAP34: GTP-binding protein 1 305 IPR005688 GO:0006886|GO:0009707|GO:0015450
Cca07g00543 444 SUPERFAMILY Homeodomain-like 354 409 IPR009057 -
Cca07g00543 444 ProSiteProfiles AIG1-type G domain profile. 35 259 IPR006703 GO:0005525
Cca07g00543 444 MobiDBLite consensus disorder prediction 414 444 - -
Cca07g00543 444 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 1 300 IPR045058 -
Cca07g00543 444 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 355 410 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00543 Cca-Chr7 7735318 7747537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00543 355 433 G2-like Transcription Factor Family AT4G13640 58.333 4.03e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca07g00543 AIG1 1.2e-36 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00543 - - gmx:100782594 552.747