Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00541 ATGGGGAGGAAGCGAAAGCTAGTTCCCAAATCTTCTCAACCCGCCGAACCCCCGCTCAAGCTGCAACAATCCCAACCACTTCCCCAAAATGCCCCTCagcagtaccaagaggaagaatccgaggaagaagaagaggtagaggaagtggaagaggaagaagaggaagaggaggaggaggaggaagaggaggaagaaagcgaagacgaCCAGCCACAGCAGCAGCAGCAACAAGACTTCGACGACGATCCGATCCCCAAGCTTCTGGAGCCCTTGAGCAAGGACCAGATCGTTAACCTACTGTGCGAGGCGGCGGCGACCCACCGCGACGTGGCGGAGCGGATCCGGAAGGCGGCGGACGAGGACCCCGTGCACCGGAAGATCTTCGTGCACGGCCTGGGATGGGACACCACCGCCGGAACCCTAATCAGCGCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTTAAGACGCGCCGTGGCGCGCGCAACGCCCTCAAGCAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTCGCCTCCATCGGCCCCGTcagcaacaacaccccgcagcagcagcagcagcagCCGCAGGCGGCTGCGGCGCCGCCTGCGCAGGCTTATTCGGAGTACACGCAGAGGAAGATTTACGTGAGCAACGTTGGTGCCGATTTGGACCCGCAGAAGCTTCTCGTGTACTTTTCGCGGTTCGGTGAAATTGAGGAAGGGCCGTTGGGGCTTGACAAGGTTACGGGAAAACCCAAAGGGTTTTGCTTGTTTGTTTACAAGAGTGCAGAGAGTGCGAGGAGGGCCCTAGAGGAGCCTCACAAGGATTTCGAGGGGAATATTTTGCATTGCCAGAAGGCCATTGATGGGCCCAAGCCCGGGAAATTGCAGCAGCAGCAATACGGGAATGTTGGTCAGGCCCAGAGGGCCCAGTTTCAGAGGAATGATAATTCTAGTGCTGCTGGCTATGTTGGTGGTGCTATGGCGGCGCAGCCGGGGCACTTGATGGCGCCGGCTGGGCCGGCGATTGGGTTTAATCAGGCGGCTGCTGCGCAGGCCGCCTTGAATCCGGCGCTGGGGCAGGCGTTGGCGCTGCTGGCTTCGCAGGGAACGATGGGGCTGACTAATTTGTTGGGTGGTATTGGAACGAGTGCTGCGGTGAACCCTGTTGTGCCTGCAGCTGGGGCTGGAGTGCAAAGTGGTTACAATGCTCAGGCGAGTATAAGTCCGGGTGTTATTGGAGGATATGGGAATCAGGTGGGGTTGCAGACGGCTTATCCGAATCAGCAGATAGGGCAGGGTGGTTCCGGAAGAGGGCAGTATGGTGGTGGTGCTGCGCCTTACATGGGGCACTAG 1422 0.5387 MGRKRKLVPKSSQPAEPPLKLQQSQPLPQNAPQQYQEEESEEEEEVEEVEEEEEEEEEEEEEEEESEDDQPQQQQQQDFDDDPIPKLLEPLSKDQIVNLLCEAAATHRDVAERIRKAADEDPVHRKIFVHGLGWDTTAGTLISAFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVSNNTPQQQQQQPQAAAAPPAQAYSEYTQRKIYVSNVGADLDPQKLLVYFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKDFEGNILHCQKAIDGPKPGKLQQQQYGNVGQAQRAQFQRNDNSSAAGYVGGAMAAQPGHLMAPAGPAIGFNQAAAAQAALNPALGQALALLASQGTMGLTNLLGGIGTSAAVNPVVPAAGAGVQSGYNAQASISPGVIGGYGNQVGLQTAYPNQQIGQGGSGRGQYGGGAAPYMGH 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00541 473 CDD RRM_RBM24_RBM38_like 234 309 - -
Cca07g00541 473 PANTHER - 29 473 - -
Cca07g00541 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 310 IPR000504 GO:0003723
Cca07g00541 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 193 IPR000504 GO:0003723
Cca07g00541 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 302 IPR000504 GO:0003723
Cca07g00541 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 202 IPR000504 GO:0003723
Cca07g00541 473 PANTHER GEO13361P1-RELATED 29 473 - -
Cca07g00541 473 MobiDBLite consensus disorder prediction 36 75 - -
Cca07g00541 473 MobiDBLite consensus disorder prediction 16 35 - -
Cca07g00541 473 MobiDBLite consensus disorder prediction 1 87 - -
Cca07g00541 473 SUPERFAMILY RNA-binding domain, RBD 210 333 IPR035979 GO:0003676
Cca07g00541 473 SMART rrm1_1 235 307 IPR000504 GO:0003723
Cca07g00541 473 SMART rrm1_1 126 198 IPR000504 GO:0003723
Cca07g00541 473 MobiDBLite consensus disorder prediction 202 225 - -
Cca07g00541 473 Coils Coil 32 70 - -
Cca07g00541 473 SUPERFAMILY RNA-binding domain, RBD 116 213 IPR035979 GO:0003676
Cca07g00541 473 MobiDBLite consensus disorder prediction 202 222 - -
Cca07g00541 473 Gene3D - 205 328 IPR012677 -
Cca07g00541 473 Gene3D - 29 204 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00541 Cca-Chr7 7711735 7718025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00541 233 410 C2H2 Transcription Factor Family AT2G19380 29.412 1.12e-10 62.0