Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00535 ATGAAGATGGGACGAACCAAGCTTCTGCTTTCAGATTTCGTTCTGTCTTTCATGTGGGTATGGTCCGGTGTTCTCATTCGGATATTCCTCTTCAAATATCTTTCCTTCGCTGATGCACTTCTCGCTGAGCTTCTCAAGACAACCTTATCCGTCACCAACATGTTCCTCTTCGCCTTCCTCGTTAAGGTTACACGTGGCGGTGCCTACAACCCCCTCACCGTTTTGGCTGATGCTATCTCCGGGGATTTTAACAACTTCCTTTACTGCGTTGGTGCCAGAATCCCCACTCAGGTGATTGGATCTATTGTTGGAGTTAAACTTCTTATTGATACAATTCCTGAAGTAGGACAGGGACCACGTCTGAATGTCGACATTCATCAAGGTGCACTGACAGAAGGATTACTAACATTTGGAATTGTTATCATTTCACTTGGACTTGCCATGAAAGTTCGTGAAAATTTCTTCATGAAGACTTGGATCTCCAGCCTCTCCAAGTTAACACTTCATATACTTGGCTCTGATTTCACTGGTGGTTGCATGAACCCTGCATCTGTAATGGGATGGGCTTATGCTCGAGGGGATCACATAACTAAGGAGCACATCCTTGTGTACTGGCTTGCACCCATAGAGGCAACTATTTTAGCAGTGTGGACATTCAAATTTCTAGTCCAGCCTGTTATAAAAGATAAAACAGCCTCTAAAAGTAAATCAGATTGA 717 0.4379 MKMGRTKLLLSDFVLSFMWVWSGVLIRIFLFKYLSFADALLAELLKTTLSVTNMFLFAFLVKVTRGGAYNPLTVLADAISGDFNNFLYCVGARIPTQVIGSIVGVKLLIDTIPEVGQGPRLNVDIHQGALTEGLLTFGIVIISLGLAMKVRENFFMKTWISSLSKLTLHILGSDFTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIEATILAVWTFKFLVQPVIKDKTASKSKSD 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00535 238 Pfam Major intrinsic protein 6 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00535 238 PRINTS Major intrinsic protein family signature 7 26 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00535 238 PRINTS Major intrinsic protein family signature 89 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00535 238 PRINTS Major intrinsic protein family signature 131 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00535 238 PRINTS Major intrinsic protein family signature 162 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00535 238 PRINTS Major intrinsic protein family signature 202 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca07g00535 238 PANTHER AQUAPORIN SIP2-1-RELATED 2 238 IPR044226 GO:0015267
Cca07g00535 238 Gene3D Glycerol uptake facilitator protein. 4 237 IPR023271 -
Cca07g00535 238 SUPERFAMILY Aquaporin-like 6 228 IPR023271 -
Cca07g00535 238 PANTHER AQUAPORIN SIP2-1-RELATED 2 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00535 Cca-Chr7 7636108 7639244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00535 3 238 Major Intrinsic Protein MIP AT3G56950 57.384 3.13e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00535 K09875 - gmx:100786138 409.838