Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00527 ATGGAACACCATTTTGGTCAAGACACAGCACCTGCATCTGGGTCCTTTGATAAGACCAGGGTTTTAAATGTGAAGCCATTGAGAACTCTTGTTCCTGTGTTCCCTTCACCATCTAATCCTGCTTCATCATCGAATCCACAAGGTGGTGCTCCTTTTGTTTGTGTTTCTCCTTCTGGTCCTTTTCCTTCTGGGGTTGCTCCTTTCTATCCTTTCTTTATCTCCCCGGAATCCCAGAGGCTTTCTGAACAAAATGTGCAAACCCCGACTGCCCAACGTGTGCCTGCAGCTCCAATATCTACTGCAGTTCCAATTAATTCATTTAGGACACCAACTGGGGCTGCAAATGGGGATGTGGGCTCGTCACGAAAGAGTACCCGGAGTCGTAGGCAGGTCATAGAGGATGATGGATACAGTAATGTTGAGATTGATGAATTTGATGTAGAAGATGGAACTGGGACTGGGAGGTCAAAGCGCAAGCCACAGAAGAAGGCAAAGGCACAGCAGAGTGGTGGTTCTGTTTCTGCCGATGTTGATCCGGATGCAGTGGCTGCTGATATTCTCAAATCACTTAACCCTATGGTCTTTGATGTACTAAATCAACCAGAAGGTAGCAGGGACTCTGTTGCATATACACTCATGATATACGAAGTGATGCGGAGAAAGCTGGGACAAATTGAAGATTCAAATAGGGCAGCTAACTCTGGAGCAAAACGGCCTGATTTGAAGGCAGGTGCAATTATGATGAATAAAGGGATTCGGACCAACAGCAAGAAGCGTATTGGACTTGTTCCTGGTGTTGAGATTGGGGATATTTTCTATTTCAGATTTGAATTGTGCTTAGTGGGTTTACATGCTCCTTCTATGGCTGGAATTGATTACATCGGTTCCAAAACTAGTCAAGAGGAAGAGCCCTTAGCTGTAAGTATTGTCTCATCTGGAGGGTATGAAGATAATGTGGAGGATGGGGATGTACTGATTTACAGTGGCCAAGGTGGGGTTAACCGTGACAAGGGAGCAAGTGATCAAAAGCTTGAAAGGGGTAATCTTGCATTGGAGAAGAGTGCACATAGAGGTAATGAAGTGAGAGTAATTAGGGGTTTGAGGGATGTACAACATCCAACTGGGAAGGTATATGTCTATGATGGCCTTTACAAGATTCAAGATTCCTGGGTGGAGAAAGCAAAATCTGGTTTCAATGTTTTCAAGTATAAGTTAGTCAGGTTGCCTGGACAGCCTCAAGCATATATGATTTGGAAATCTGTTCAACAATGGACTGAGAAATCTGCTTCAAGAACAGGGATTATATTGCCTGATCTTACTTCAGGGGCAGAAAAGGTACCTGTTTGTCTTGTGAATGATGTTGATACTGAGAAGGGCCCTGCACATTTCACTTACATCAAAGATCTCAAGAATTTGAGGCCAGCTGCTCCTGTGGAATCTTCTACAGGGTGTTCTTGTGTTGGTGGATGTCAAGCTACCAATTTTGACTGTCCTTGCATTCACAAGAATGGAGGATATCTACCATATTCTGCAGCTTCATTACTTGCGGACCTAAAATCTGTGATATATGAGTGTGGTCCTTCTTGTCAGTGTCCTCCTAGTTGCCGAAATCGGGTTTCCCAAGGTGGCCTGAAATTTCGTTTGGAGGTTTATAAAACCAAGAATAAAGGTTGGGGTCTTAGATCATGGGATGCAATTCGTGCAGGAACATTCATATGTGAGTATGCAGGGGAAGTCATAAATAATGCTAGAGTAGAGGAGCTTGGTGGTGACAATGAAGATGATTACATTTTTGATTCGACTCGCATTTATCAGCAACTGGAGGTTTTTCCTGGTGATACTGAAGCTCCAAAAATCCCATCCCCCCTTTATATATCAGCAAGAGCAGAAGGGAATGTTGCTCGGTTTATGAATCACAGCTGCTCTCCCAATGTATTGTGGCGTCCAGTCATTCGTGAAAATAAGAATGAGTCAGATCTTCACATTGCATTCTATGCAATTAGACATATCCCTCCTATGATGGAGTTAACTTATGATTATGGGGTAGTGCTTCCTCTCAAAGTAGGTCAGAGGAAAAAGAAATGCTTATGTGGATCTGTAAAGTGCAGGGGTTACTTTTGTTAA 2124 0.4341 MEHHFGQDTAPASGSFDKTRVLNVKPLRTLVPVFPSPSNPASSSNPQGGAPFVCVSPSGPFPSGVAPFYPFFISPESQRLSEQNVQTPTAQRVPAAPISTAVPINSFRTPTGAANGDVGSSRKSTRSRRQVIEDDGYSNVEIDEFDVEDGTGTGRSKRKPQKKAKAQQSGGSVSADVDPDAVAADILKSLNPMVFDVLNQPEGSRDSVAYTLMIYEVMRRKLGQIEDSNRAANSGAKRPDLKAGAIMMNKGIRTNSKKRIGLVPGVEIGDIFYFRFELCLVGLHAPSMAGIDYIGSKTSQEEEPLAVSIVSSGGYEDNVEDGDVLIYSGQGGVNRDKGASDQKLERGNLALEKSAHRGNEVRVIRGLRDVQHPTGKVYVYDGLYKIQDSWVEKAKSGFNVFKYKLVRLPGQPQAYMIWKSVQQWTEKSASRTGIILPDLTSGAEKVPVCLVNDVDTEKGPAHFTYIKDLKNLRPAAPVESSTGCSCVGGCQATNFDCPCIHKNGGYLPYSAASLLADLKSVIYECGPSCQCPPSCRNRVSQGGLKFRLEVYKTKNKGWGLRSWDAIRAGTFICEYAGEVINNARVEELGGDNEDDYIFDSTRIYQQLEVFPGDTEAPKIPSPLYISARAEGNVARFMNHSCSPNVLWRPVIRENKNESDLHIAFYAIRHIPPMMELTYDYGVVLPLKVGQRKKKCLCGSVKCRGYFC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00527 707 Pfam SAD/SRA domain 260 411 IPR003105 -
Cca07g00527 707 MobiDBLite consensus disorder prediction 80 177 - -
Cca07g00527 707 Gene3D - 243 429 IPR036987 -
Cca07g00527 707 ProSiteProfiles Post-SET domain profile. 691 707 IPR003616 -
Cca07g00527 707 Pfam SET domain 557 681 IPR001214 GO:0005515
Cca07g00527 707 SMART set_7 546 687 IPR001214 GO:0005515
Cca07g00527 707 ProSiteProfiles Pre-SET domain profile. 482 543 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca07g00527 707 MobiDBLite consensus disorder prediction 80 94 - -
Cca07g00527 707 Pfam Pre-SET motif 440 538 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca07g00527 707 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 127 706 IPR025794 GO:0016571
Cca07g00527 707 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 706 - -
Cca07g00527 707 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 12 706 - -
Cca07g00527 707 SMART G9a_1 256 411 IPR003105 -
Cca07g00527 707 ProSiteProfiles YDG domain profile. 261 407 IPR003105 -
Cca07g00527 707 MobiDBLite consensus disorder prediction 102 121 - -
Cca07g00527 707 MobiDBLite consensus disorder prediction 122 136 - -
Cca07g00527 707 SUPERFAMILY PUA domain-like 243 426 IPR015947 -
Cca07g00527 707 SUPERFAMILY SET domain 446 704 IPR046341 -
Cca07g00527 707 ProSiteProfiles SET domain profile. 546 681 IPR001214 GO:0005515
Cca07g00527 707 SMART preset_2 436 530 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca07g00527 707 Gene3D SET domain 430 706 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00527 Cca-Chr7 7565645 7570326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00527 6 706 Su(var)3-9 homologs AT1G73100 48.143 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca07g00527 SAD_SRA 9.6e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00527 K24405 - gmx:100786650 1284.24