Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00523 ATGGACCAACAACACCGCCACCTCACCACCGCCGGAGCTTCTAATCCCGTGCTCCGCTGCCCCACGCTGCGCGCTATCCCCTTCGCCCGCCTCATCGCCGCCGACCGCCGCCGCCTCTTCCTCTCCGACTGCGCCGACCACCGATCCCACGACGACCACGCCGACGTCGCCTTCGCCGACTGCGCCTACTCGCGGGCGGGGCTCGTGCTCGACATGGTCTGGAACCTCGCCTTCCGTCCCTCCACGCCGCTCAGACTCTGGCTCTCCGGCTACGCCTTCGAGTGCGTCCTTCACATGGCCTTCGTCTTCTTCGAGTTTCGAACCGCAATTCGCGACTCCTTCTCTCACTCTACCTATAGCATTGTGAAGAAGCTGGAGCCTATCAACACTCTGGCATCATCTCTTTGGTGGGTATTTGGATTTTATTGGATTGTTGTGGGTGGCCAAGCACTTTTGGATGATTCTCCACGTCTCTACTGGTTAACAGTGGTCTTTCTAGCCTTTGACGTATTTTTTATAATCTTTTGCATTGGGATGGCATGTATAGTTTTCTTTGCGCTCTTCTGCATCATCCCAGTAATAGCACTAGCTTATGCTATGAGAATAAGAGAAGGGGCATCAGAAGAAGATATAAGATTACTTCCAAAGTATAGGTTTAGTCAGTCAAATTTATTGTTGATGGTCGATGACAACAAGAAGCAACTTGTTAATAAAGCAAAAGTAGATTCATGCAATGGAAGCCATATGAGTGAACTTTCTCTCCATCCAGATGATTCTGAATGCTGTATATGCCTATGTCCATATGCTGATGGAGCAGAACTGTATCGCCTTCCCTGTACCCACCATTTTCATTGCGGATGCATCAGCCGTTGGCTACGATCGAAAGCAACCTGCCCGCTCTGCAAATTTAATATCCTTAGAGGTGATACATTGGTTTGA 939 0.5037 MDQQHRHLTTAGASNPVLRCPTLRAIPFARLIAADRRRLFLSDCADHRSHDDHADVAFADCAYSRAGLVLDMVWNLAFRPSTPLRLWLSGYAFECVLHMAFVFFEFRTAIRDSFSHSTYSIVKKLEPINTLASSLWWVFGFYWIVVGGQALLDDSPRLYWLTVVFLAFDVFFIIFCIGMACIVFFALFCIIPVIALAYAMRIREGASEEDIRLLPKYRFSQSNLLLMVDDNKKQLVNKAKVDSCNGSHMSELSLHPDDSECCICLCPYADGAELYRLPCTHHFHCGCISRWLRSKATCPLCKFNILRGDTLV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00523 312 Pfam Ring finger domain 260 302 IPR001841 -
Cca07g00523 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 308 IPR013083 -
Cca07g00523 312 SMART ring_2 261 301 IPR001841 -
Cca07g00523 312 SUPERFAMILY RING/U-box 254 306 - -
Cca07g00523 312 ProSiteProfiles Zinc finger RING-type profile. 261 302 IPR001841 -
Cca07g00523 312 PANTHER RING-FINGER UBIQUITIN LIGASE 21 312 - -
Cca07g00523 312 PANTHER TARGET OF ERK KINASE MPK-1 21 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00523 Cca-Chr7 7441921 7445894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00523 59 309 C3H Transcription Factor Family AT1G68070 43.310 3.76e-79 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00523 - - gmx:100808066 543.117