Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00512 ATGTCAGAAAGAGTATCCATTAGAGATGTTGAGAACAAAAAGTTGAAGCGTAAGATTGAGGAGGAGCCACCCACCTTGGCCATGGAGGACTCAAATCTGTTTCTGAATCAACTCAGCTGTAAGTTCTGCAACAAGAAGTTCCGCAATTCTCAAGCCCTAGGAGGGCACCAAAATGCTCACAAGCGTGAGCGACTCCTTTTAAATATTGAGAAAGAGCTTGAAATGAAGGCTCTTGAAAATGTTCCACTTTATTCACCTCCAACGTATCTTCCATTTCAAGGGACACCCTTGTATCATGGTGCTCTCATGCACCCCATGAAGCACATGCCTAACATGTCTTTCACTCTTGCACAACCTAGCTATGACATTAACCAAGGGTTTCCCCTCGCGCCACATTTTTTTGGAATGACAAGCACTTCAGGTGGAGGTGATGCAACATTTCCAACGATATTGAACACTGAAATTGAGGGGTATTTTTACCAGATTCCTTCACTTGTTGAGAGTGCAACTACAAGTCTGGTTGGTGGTTCTTTATCTTCTCGTGTTTGTGTTGATGGTCTTACTCTTCAGGGAAGTCCAAGTGTCACAACTAATGACTCATCTTCATCCGATCTGGACTTGTCTCTCAAACTTTGA 636 0.4324 MSERVSIRDVENKKLKRKIEEEPPTLAMEDSNLFLNQLSCKFCNKKFRNSQALGGHQNAHKRERLLLNIEKELEMKALENVPLYSPPTYLPFQGTPLYHGALMHPMKHMPNMSFTLAQPSYDINQGFPLAPHFFGMTSTSGGGDATFPTILNTEIEGYFYQIPSLVESATTSLVGGSLSSRVCVDGLTLQGSPSVTTNDSSSSDLDLSLKL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00512 211 PANTHER ZINC FINGER PROTEIN JAGGED 30 165 IPR045320 GO:0003700
Cca07g00512 211 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 30 165 - -
Cca07g00512 211 SUPERFAMILY beta-beta-alpha zinc fingers 39 65 IPR036236 -
Cca07g00512 211 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Cca07g00512 211 Gene3D Classic Zinc Finger 34 81 - -
Cca07g00512 211 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00512 Cca-Chr7 7253758 7254393 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00512 38 211 C2H2 Transcription Factor Family AT1G24625 31.111 1.14e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g00512 None None None