Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00511 ATGTCGAAGGCTAAGGGAGACGTTAGAAACAGAAAATTGAAGCGCAAGATGGCAGAAGAGTCCACCATGACAGAAGAGGACACGGCAGAACAATTACTGTGCCTAAGATATGGAAAAAGCACCAACACCACCATGAACTTGCCCTCCTCAATGTTCAATACACATACAAAATCACCGAGAGTCTTGCTCACAAGGGATTCAAGTTCTTCTCCCACCAATGACCAAGTTCAAGAAGAGACTCAGTTCTCGTGCAAATTTTGTGAAAAGAAGTTTCTCAATGCTCAAGGACTCGGGGGCCATCAGAAGGCTCACAAGAGGGAGCGAATCTTCTTCAATGCGAAAAAAGAGCTAGAGAAGAACCCTTTAGGGTTTAGACCCACAAATTTTCAATTTTATCTAAATTCATTTTCACCTATGCCAAATGGTACTCCCATGCAATCGACACCCTTTTCTTGTAATCTTGCACCACCCACAGTTGGTTATGGCACTAACAATGGAATTCCAAGTTCTTGGGGTGTATGGAGATTATTGAACACCGAAAGTGTAGGGCTATGCTTGCAGAATCCTTCACTTTCTGAGAGTGCAGCAAAACCTTCCGTTGATGGTTCTTTTTCTCGCGTTGGTGCTGCTTTTGGTGGTCTTCGGAGAATTCCAACTATCGCAGCAACAGATTCACCTTCAGCAGATTTGGACTTGTCGCTAAAACTTTGA 711 0.436 MSKAKGDVRNRKLKRKMAEESTMTEEDTAEQLLCLRYGKSTNTTMNLPSSMFNTHTKSPRVLLTRDSSSSPTNDQVQEETQFSCKFCEKKFLNAQGLGGHQKAHKRERIFFNAKKELEKNPLGFRPTNFQFYLNSFSPMPNGTPMQSTPFSCNLAPPTVGYGTNNGIPSSWGVWRLLNTESVGLCLQNPSLSESAAKPSVDGSFSRVGAAFGGLRRIPTIAATDSPSADLDLSLKL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00511 236 SUPERFAMILY beta-beta-alpha zinc fingers 78 110 IPR036236 -
Cca07g00511 236 MobiDBLite consensus disorder prediction 1 26 - -
Cca07g00511 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Cca07g00511 236 MobiDBLite consensus disorder prediction 1 23 - -
Cca07g00511 236 Gene3D Classic Zinc Finger 62 123 - -
Cca07g00511 236 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Cca07g00511 236 PANTHER ZINC FINGER PROTEIN JAGGED 62 236 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00511 Cca-Chr7 7247280 7247990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00511 78 130 C2H2 Transcription Factor Family AT5G10970 39.655 8.75e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00511 - - ccaj:109802677 480.715