Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00508 ATGTCAATGGCACTCTCACAGCTAAGCCACTCTCTGGAAAATGAACTTAAGACTCAAGACTCGGAATTCCCTCTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAATCACTTGGCAAACTCCATTCTCTGGAGATGAAGTGGAAGTTCATTTCAGTGGACATGTTGAAAATGGAGAATCTCTTGAATCCAGTTATGATAAAGGGTCCCCGTTTCGTTTCAAATTAGGCCAATGTGAAGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAGTACCACCTAACTTGGCATATGGGGAAGTTGGGTCTCCTCCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTGTCTTGGAGTTCCATCAGGGATTTGACTGGCGATGGAGGAATCATGAAAAAGATAATGAAAGAGGGAGAAGGATGGGCAACTCCCACAGAGGCTGATGAAGTGCTAGTGAAATATGAAGCAAGTCTAGAGAATGGGATGCTTGTCTCCAAGTCAGATGAGGGTGTGGAGTTTAATGTAAGTGATGGGTATCTATGTCCTGCCTTGAGTATAGCAGTGAAGACAATGAGAAAGGGCGAGGTGGCAGAACTAGCTACGAGATTCTCTTATGGGCTCAGCCAAGATTCAAATAGAACCACTGAGCTAGATGGTTGTTTCTTACCAAATTCTAATTTAAGTAGCATCAAGCTTGAGCTTGTATCATGGAAAATTGTTACTGATGTCACGGGAGATAAGAAGATACTAAAAAAAATTAACAGAGTAGGTGAAGGGTTTGATCGTCCTAACGAGGGATCCCAAGTGAAAGTGATATATGTATGTAAACATGAAGATGGTACGATTATTGAGAGGAAAGGATCAGATGAAGAACCTTTTGAGTTCACAACTCAAGAAGAACAGGTGCCCGAGGGTCTAGAAAGAGCAATAATGACAATGAGAAAGGCAGAGCAAGCTCTGGTGACTGTCGATGCTGAATATCTGTGCGACTATAATATTTCACAGGGCAACACAGCCAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAACCATTTTGGAAAATGGACACACAAGAGAAAATAGAAGCATGTGAGAGGAAGAAGCATGATGGAAATCTGCTATTCAAAGCTGAAAGTTTCAGGCGCGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAGTTTGCTCACTCATTCAATGAGGATGAGAAGAGTCACGCTAATACCTTGCGTTTATCTTGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAGACTATGCACAAAGGTCCTAGAACAAGACCCTTCAAATATCAAGGCTCTCTACAGAAGATGCCAAGCATACTTGAAAACATCAGACTTAGAGAAAGCTGAAGCTGATGTTAAAACAGCTTTGATTATTGATCCCAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACTTAAGCAAAAGGAATACAGTAGATATGAAGCTAACATCTTCGGCACAATGCTTTCAAGGATCAGTTAG 1620 0.4043 MSMALSQLSHSLENELKTQDSEFPLKEIGNEGLTKRILRKGITWQTPFSGDEVEVHFSGHVENGESLESSYDKGSPFRFKLGQCEVIKGWDEGVATMKKGERAIFKVPPNLAYGEVGSPPLIPPNATLIFDIEMLSWSSIRDLTGDGGIMKKIMKEGEGWATPTEADEVLVKYEASLENGMLVSKSDEGVEFNVSDGYLCPALSIAVKTMRKGEVAELATRFSYGLSQDSNRTTELDGCFLPNSNLSSIKLELVSWKIVTDVTGDKKILKKINRVGEGFDRPNEGSQVKVIYVCKHEDGTIIERKGSDEEPFEFTTQEEQVPEGLERAIMTMRKAEQALVTVDAEYLCDYNISQGNTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACERKKHDGNLLFKAESFRRASKKYEKAVKYIEFAHSFNEDEKSHANTLRLSCNLNNAACKLKLGEYIEASRLCTKVLEQDPSNIKALYRRCQAYLKTSDLEKAEADVKTALIIDPNNRDIKLEYKELKLKQKEYSRYEANIFGTMLSRIS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00508 539 Gene3D - 23 140 IPR046357 GO:0003755
Cca07g00508 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Cca07g00508 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 364 538 - -
Cca07g00508 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 255 362 - -
Cca07g00508 539 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 260 - -
Cca07g00508 539 SUPERFAMILY FKBP-like 255 392 - -
Cca07g00508 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Cca07g00508 539 SUPERFAMILY TPR-like 380 530 IPR011990 GO:0005515
Cca07g00508 539 SUPERFAMILY FKBP-like 143 225 - -
Cca07g00508 539 PANTHER PEPTIDYLPROLYL ISOMERASE 364 538 - -
Cca07g00508 539 PANTHER PEPTIDYLPROLYL ISOMERASE 3 260 - -
Cca07g00508 539 PANTHER PEPTIDYLPROLYL ISOMERASE 255 362 - -
Cca07g00508 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 231 IPR001179 GO:0003755
Cca07g00508 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Cca07g00508 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Cca07g00508 539 Pfam Tetratricopeptide repeat 450 506 - -
Cca07g00508 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 257 IPR001179 GO:0003755
Cca07g00508 539 Gene3D - 258 375 IPR046357 GO:0003755
Cca07g00508 539 SUPERFAMILY FKBP-like 28 138 - -
Cca07g00508 539 Gene3D - 141 257 IPR046357 GO:0003755
Cca07g00508 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Cca07g00508 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Cca07g00508 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Cca07g00508 539 Gene3D Tetratricopeptide repeat domain 376 532 IPR011990 GO:0005515
Cca07g00508 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00508 Cca-Chr7 7205987 7210962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00508 27 538 Calmodulin-binding Proteins AT5G48570 53.950 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00508 - - gmx:100785412 951.429