Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00497 ATGAGGGAAGAGGATTCCAATTGGTTCTCGCGATGGGAAGAGGAACTCCCATCTCCGGATGAACTCATGCCCCTATCGCAAACCCTAATCACACCCGATCTAGCCATGGCCTTCGACATCCGAAACCCTCACACCACGACCGCCGCGCAACAACAGCAGCACCAGCCTCCGCCGCCCTCCAACCCTTCCTCGCTCCCCAACCCGCAGCCCACCTCCGCCGAGTTCGCCGACTCCGCCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCCCGCACCCTCAAGCGCCCCCGCCTCGTCTGGACCCCACAGCTCCACAAGCGCTTCGTCGACGCCGTCGCCCACCTCGGCATCAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGACGGCTTGACCCGCGAGAACGTTGCCAGCCACCTCCAGAAGTACCGCCTCTACCTCAAGCGCATGCAGGGGATTAcctccgccggggccggcggccctggcggtgccgcctccgccgccgaccccgccgccgACCACCTCTTCGCCAGCTCCCCGGTTCCCGCCCATTTCCTTCACCCCGCGGCGCGGCCGAATTCGGACCACTTCCTGCCGTTTGTGCCGTACCACCACCGGCAGGTGGGGCACTTCGGGTCGCCGCCGAACGGGCACTTTGAGAACCCGTTCATGTCTAGGCCGAGTCTTCAGAGGATGGGGGGTGGCCCTGTGCACAATCACCACCCTGTTTCTGGTTATGTGGAGGACATGGAATCTGCTAATGCTGCCTCTGGAGGTGGTAATAAACGTGGATTACAACTTCTCCCTGGTATCAAGTTTTTGTGTCGTGTAGAGGTTTACTATGCTTACGAACACAATAAGTTCCATGTTTACTTAATTGTGTATTTCTTCTTTGACTAG 912 0.5537 MREEDSNWFSRWEEELPSPDELMPLSQTLITPDLAMAFDIRNPHTTTAAQQQQHQPPPPSNPSSLPNPQPTSAEFADSAELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGITSAGAGGPGGAASAADPAADHLFASSPVPAHFLHPAARPNSDHFLPFVPYHHRQVGHFGSPPNGHFENPFMSRPSLQRMGGGPVHNHHPVSGYVEDMESANAASGGGNKRGLQLLPGIKFLCRVEVYYAYEHNKFHVYLIVYFFFD 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00497 303 Pfam Myb-like DNA-binding domain 100 148 IPR001005 -
Cca07g00497 303 MobiDBLite consensus disorder prediction 1 95 - -
Cca07g00497 303 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 259 IPR044841 GO:0003700|GO:0006355
Cca07g00497 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 97 149 IPR006447 GO:0003677
Cca07g00497 303 SUPERFAMILY Homeodomain-like 93 153 IPR009057 -
Cca07g00497 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 152 IPR017930 -
Cca07g00497 303 Gene3D - 93 155 - -
Cca07g00497 303 MobiDBLite consensus disorder prediction 1 18 - -
Cca07g00497 303 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00497 Cca-Chr7 6892140 6894149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00497 1 273 G2-like Transcription Factor Family AT3G10760 53.061 7.68e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca07g00497 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00497 - - ccaj:109802866 467.618