Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00496 ATGCCTTCGAGTTCGAGTTCAAAGTCGAAAAAGAAGCACTCCAAGGCGCAGCAGCAGCAGCACTCATCGTTGGCCTCCAATGCCACCGCGCCTTCCAAAGCAACGCGCCAACCGCACGAGCTCACCTCTTTATGCGAACGCGCTTCTCGAAGCTTCCCTTCTCTCATCGCAAATTCCGCATTCGTCGCCGAAATCACCCATGTCGACGACACCGTTCCCGTTTCTAAGGGCTTCAGAATTTGGCTCTCCGAACCTTCCATGCTCTCCTCCTCTCTTCCCCCCGGTTCCATCGTCTCGGTGTCTATTCCATCTCCAGGGGAGGAAAGTTCGCAATTGCATAGCTTTCCCCTCGCGTCGTTAGCTAATGAATGTGTCAAATTCTATGAATTGGAAATTGGCAAGGCATTGGATGATGATGATGCAGGAAACTACTTTGTGCTTGCAACAGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGTCTGTCTTCAAACCTTTATTATACCATGGGATGTCCTCCTTTGGGCACGAGTGTGTTTGTTCATCCAATACGGAAACAATTCTTGTCTAGTTTTGCCAATGGGAGCAATGAACAGCATTCTACAGAAAATAATTGTCTGTCTATATATAATTGCAAGGAACTGTATCTTCAGCTGGTTCCTTCTAAGAATGGGCAACCGTTGAAATTTAATAACTTTCCCTCATTAGATTTGTCTAAGAGGAAATCCCATGTCCAATCTGAGAATGATATTGTTGCATCCCCTGCTACACCTTCTTATGGATCAAAGTTTTCTAATGCTAGTGGGCTGTCTTCTCCACTATTTGAAGATTCAGTGTCTAGTGTGCCCAAACAGAATAGTCAACCATTGATTTCTTTTGATGTAAACTTAGCTTTGGGGGATGAAAGTTCTAAAAAATTACTACAGACTTGTGCAACTTCATGGCTCTATTCTCGATCTTTACTGCTAGGGAATCTTGTCAATGTCCCAATGTTTTCAGAGTTGTGCATTTTCCAAGTGATAGGAGCTAAGAAGGAGCCAGTTACCAGATCTGATCACTATCCATCAAATGGAAGCAGTGATTTATATCTTGAGGATTCTGATATAGCAGACAGTGTAAATCAGGCTTTCACCGTTAATTATGAAACAAAGGTGTTTTTGTCTCTGCCATCAAATGTAGTGTCTGAAGAGCCAATTCAAAGGGATATACCTTGCGTGAAACTAGAAGACATAGTTACTAACACTAGCTTACGTGATAATATCTCTAAATTGGGTGGTCTATCCAAAGAGTATACACTATTAAAGGACATAATTTCATCATCAGTGAACAGTGCTTTATCAAGtgcttatggagaagtttacccaTATAGACCCATATTCCAATGGAAGAGGGCATTTAGCTCTTTTGCTTCAGAAGCATATTTGGAGCATCCTCTGCTCTTGTACTTTATTTCTCTTTCTAATGAATTTCTTCTTTTTATAGAAAAAAAAGTCTACTGGGAACTTAAAGGGTCTTTGAATATATTTCTCGTATTTATTGGACTATATGTTATGCTCATTGTTGCGTATACAACTACTATTGGAGAGGGGATGGATGGAATTAGCAGAACTGAAGGGCTACTTGTAATTGCTGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCAGGAAGATTTGACAAAGAAATTGAAATTGGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGTTCACTCTTCTCAGTGAAATGGATCACACACTTTCTGAGTTACAAATTGAACACCTTGCCACAGTCACTCACGGTTTTGTGGGTGCTGATCTAGCTGCCCTTTGCAATGAAGCAGCCTTAATTTGTTTACGACATTATGCTAATTTTAAGACTTATGGTTCTTGTTTTGATAACGTAACAGAGCAACCTGCTCTGATGAATGGTGCAACAAACTCAATAGATTATTCAGGTGGTGCATCTTCCTGCAAGATGGGAACAACTTCTGAAACTATAGAAATAACTCTTGATAGTGGTGAAGAAGAGATTTTGAAAGTAAGTTTTGAAGATTTTCAGAAGGCTCGGATGAAAATAAGACCTAGTGCCATGAGAGAGGTAATTCTTGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGAAGCATTCAACCGGATTGGGACTCGGCCTCCTACAGGTGTATTGTTGTTTGGGCCTCCAGGTTGCAGTAAAACCCTCATGGCACGTGCAGTTGCTTCCGAAGCAGGTCTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGCGAATCTGAGAAGGCTGTCAGATCATTATTTGCAAAAGCTAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGATAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTATCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTGCATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCGGACAAGATTGACCCTGCCCTCTTAAGACCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGTATTCATCTGCAGAAAATCCCATGTGGTTCTGATGTTAGCCTTAAAGAACTAGCTGAACTCACAGATGGTTCTACAGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGAAGTCCAATCCTACCAAAAGTTGTCAACAAAATTTCAAAGGGCCGTCCACTGCTGTGATATAAAGGATGAATTCAATCATATGCAGCGTGACAGTAGATCTACTCGGTTCAACATTTGGAAGTTCCTCTATCAGTTTCCAGCTTCCATCTTCAATTTGAGAACTGCTCGAACTAGTTAA 3063 0.4176 MPSSSSSKSKKKHSKAQQQQHSSLASNATAPSKATRQPHELTSLCERASRSFPSLIANSAFVAEITHVDDTVPVSKGFRIWLSEPSMLSSSLPPGSIVSVSIPSPGEESSQLHSFPLASLANECVKFYELEIGKALDDDDAGNYFVLATVFPSSKVLKNGVRLSSNLYYTMGCPPLGTSVFVHPIRKQFLSSFANGSNEQHSTENNCLSIYNCKELYLQLVPSKNGQPLKFNNFPSLDLSKRKSHVQSENDIVASPATPSYGSKFSNASGLSSPLFEDSVSSVPKQNSQPLISFDVNLALGDESSKKLLQTCATSWLYSRSLLLGNLVNVPMFSELCIFQVIGAKKEPVTRSDHYPSNGSSDLYLEDSDIADSVNQAFTVNYETKVFLSLPSNVVSEEPIQRDIPCVKLEDIVTNTSLRDNISKLGGLSKEYTLLKDIISSSVNSALSSAYGEVYPYRPIFQWKRAFSSFASEAYLEHPLLLYFISLSNEFLLFIEKKVYWELKGSLNIFLVFIGLYVMLIVAYTTTIGEGMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRSDILFTLLSEMDHTLSELQIEHLATVTHGFVGADLAALCNEAALICLRHYANFKTYGSCFDNVTEQPALMNGATNSIDYSGGASSCKMGTTSETIEITLDSGEEEILKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHEAFNRIGTRPPTGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLQKIPCGSDVSLKELAELTDGSTGADISLICREAAVAAIEESLDASVITMKHLKMAIKQIQPSEVQSYQKLSTKFQRAVHCCDIKDEFNHMQRDSRSTRFNIWKFLYQFPASIFNLRTARTS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00496 1020 SMART AAA_5 749 887 IPR003593 -
Cca07g00496 1020 Pfam ATPase family associated with various cellular activities (AAA) 532 570 IPR003959 GO:0005524|GO:0016887
Cca07g00496 1020 Pfam ATPase family associated with various cellular activities (AAA) 753 884 IPR003959 GO:0005524|GO:0016887
Cca07g00496 1020 ProSitePatterns AAA-protein family signature. 855 873 IPR003960 GO:0005524|GO:0016887
Cca07g00496 1020 PANTHER - 527 983 - -
Cca07g00496 1020 Gene3D - 523 572 IPR027417 -
Cca07g00496 1020 PANTHER - 78 448 - -
Cca07g00496 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 965 IPR027417 -
Cca07g00496 1020 MobiDBLite consensus disorder prediction 18 39 - -
Cca07g00496 1020 CDD AAA 527 570 - -
Cca07g00496 1020 CDD AAA 719 885 - -
Cca07g00496 1020 Gene3D - 712 961 IPR027417 -
Cca07g00496 1020 Gene3D - 573 711 - -
Cca07g00496 1020 PANTHER AAA-FAMILY ATPASE 78 448 - -
Cca07g00496 1020 PANTHER AAA-FAMILY ATPASE 527 983 - -
Cca07g00496 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 630 IPR027417 -
Cca07g00496 1020 Pfam AAA+ lid domain 596 626 IPR041569 -
Cca07g00496 1020 Pfam AAA+ lid domain 907 952 IPR041569 -
Cca07g00496 1020 MobiDBLite consensus disorder prediction 1 39 - -
Cca07g00496 1020 Gene3D - 886 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00496 Cca-Chr7 6880220 6889110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00496 9 978 Calmodulin-binding Proteins AT3G56690 50.729 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00496 - - gmx:100788600 1451.42