Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00495 ATGGCATCAAGAGCCATCCTTCAACAACAGGCCAGAGGTGAAGCAGTAGCGGAAGGAGGGAAACAGCAGAAGAAAAATGGTGCAGGAGAGGGAAAGAACCGTAGAGCACTTGGTGATATTGGGAATTTGGTCAATTTAAGAGGAGTTGAAATCAAGCCCAATCGCCCAATCACAAGGAGTTTTGGTGCCCAACTACTTGCCAATAAGCAAGCAGCAGAAGCTGTTGTAGATAACAAGAAACAAGCTTGTACTAATGTGGCTGGACCTCCTGTTGCTCCAGGAGGTGCAGTGGCCAAAAAAGTGGCCCCCAAACCGGGTCAGAAGAAAGCCACTGTACAACCAAAGCCTGAGAAAGTCGTTGAAGCTAGCCCAGACAAGGAAATCCAGAAAGACAAGAAAAAGGAAGCGGACGCCAAAAGGGATTCGCGTTCTCTTACTTCAGTGCTCTCAGCTCGAAGCAAGGCAGCATGTGGCATAATTAACAAGCCAAAGGAACATGTTTTTGACATTGATGCTGGTGATGTTGAAAATGAGCTTGCTGCTGTGGAGTATATTGATGAAATTTACAAGTTCTACAGGCTTGCTGAGAATGAGAGCCGCCCTCACGACTACATAAACTCACAGCCTGAGATAAATGAGAAGATGAGAGCTATACTGATTGATTGGCTGATAGATGTTCAATCCAAATTTGAACTTTCTCTTGAGACCCTATACTTGACCATCAACATCATAGACCGGTTCCTAGCAGTTAAGACTGTTCCAAGGAGGGATCTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATATGGCCCCCTCAGGTTGATGATTTTGTCTGCCTCTCAGATAGGGCTTACACTCATGAACAGATACTAGTCATGGAGAAAACCATATTGGGCAAGCTAGAGTGGACTTTGACTGTGCCTACACCTTTTGTTTTCCTTGTTCGTTTTATCAAGGCATCAGTCCCAGATCAGGATTTGGAAAACATGGCCCATTTTCTGTCTGAGTTGGGAATGATGAATTATGCGACCTTAATGTATTGCCCATCAATGGTTGCTGCCTCAGCAGTCTTTGCAGCTAGATGCACTCTCAATAAGACCCCCCTTTGGAATGAGACACTTAAAGTGCACACCGGTTACTCACAAGAACAACTTATGGATTGTGCTAGATTATTGGTGAGCTTTCACTCCGATGTTGGAAATGGAAAGCTGAAGGTTGTGTACAGGAAGTATTCTGATCCTCAGAAAGGATCCGTTGCTGTGCTCCCACCATCTAAATATCTTCTGCAAGGAGGTTCTGCCTCCCAATTGAGTTGA 1335 0.4502 MASRAILQQQARGEAVAEGGKQQKKNGAGEGKNRRALGDIGNLVNLRGVEIKPNRPITRSFGAQLLANKQAAEAVVDNKKQACTNVAGPPVAPGGAVAKKVAPKPGQKKATVQPKPEKVVEASPDKEIQKDKKKEADAKRDSRSLTSVLSARSKAACGIINKPKEHVFDIDAGDVENELAAVEYIDEIYKFYRLAENESRPHDYINSQPEINEKMRAILIDWLIDVQSKFELSLETLYLTINIIDRFLAVKTVPRRDLQLVGISAMLMASKYEEIWPPQVDDFVCLSDRAYTHEQILVMEKTILGKLEWTLTVPTPFVFLVRFIKASVPDQDLENMAHFLSELGMMNYATLMYCPSMVAASAVFAARCTLNKTPLWNETLKVHTGYSQEQLMDCARLLVSFHSDVGNGKLKVVYRKYSDPQKGSVAVLPPSKYLLQGGSASQLS 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00495 444 CDD CYCLIN 215 304 IPR013763 -
Cca07g00495 444 Pfam Cyclin, C-terminal domain 314 430 IPR004367 -
Cca07g00495 444 MobiDBLite consensus disorder prediction 119 142 - -
Cca07g00495 444 MobiDBLite consensus disorder prediction 87 144 - -
Cca07g00495 444 MobiDBLite consensus disorder prediction 1 37 - -
Cca07g00495 444 PIRSF Cyclin_A_B_D_E 1 444 IPR039361 -
Cca07g00495 444 ProSitePatterns Cyclins signature. 216 247 IPR006671 -
Cca07g00495 444 PANTHER G2/MITOTIC-SPECIFIC CYCLIN S13-6 21 437 - -
Cca07g00495 444 Gene3D - 187 426 - -
Cca07g00495 444 Pfam Cyclin, N-terminal domain 187 311 IPR006671 -
Cca07g00495 444 CDD CYCLIN 312 399 IPR013763 -
Cca07g00495 444 SUPERFAMILY Cyclin-like 313 432 IPR036915 -
Cca07g00495 444 SMART cyclin_7 221 305 IPR013763 -
Cca07g00495 444 SMART cyclin_7 318 400 IPR013763 -
Cca07g00495 444 SUPERFAMILY Cyclin-like 176 311 IPR036915 -
Cca07g00495 444 SMART Cyclin_C_2 314 431 IPR004367 -
Cca07g00495 444 Gene3D - 201 312 - -
Cca07g00495 444 PANTHER CYCLINS 21 437 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00495 Cca-Chr7 6870964 6878819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00495 1 441 Core Cell Cycle Gene Families AT4G37490 50.217 8.78e-144 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00495 K21777 - gmx:547919 682.945